BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4277.p
         (467 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313706|ref|YP_003777798.1| UDP-N-acetylglucosamine pyropho...   808   0.0  

>gi|300313706|ref|YP_003777798.1| UDP-N-acetylglucosamine
           pyrophosphorylase [Herbaspirillum seropedicae SmR1]
          Length = 452

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/452 (88%), Positives = 424/452 (93%)

Query: 16  MNIVILAAGMGKRMQSSLPKVLHPLAGKPLLGHVIDTARELAPTQLCVIYGHGGDAVPKA 75
           MNIVILAAGMGKRMQSSLPKVLHPLAGKPLLGHVIDTAR LAP++LCVIYGHGGDAVP+A
Sbjct: 1   MNIVILAAGMGKRMQSSLPKVLHPLAGKPLLGHVIDTARALAPSRLCVIYGHGGDAVPQA 60

Query: 76  FAGQGLSFALQEPQLGTGHAVMQALPHLDDAAPTLVLYGDVPLTSASSLQRLLVAAGQDK 135
           FA + L+FA QEPQLGTGHAVMQALPHL+D  PTLVLYGDVPLT+A+SLQRLL AAGQDK
Sbjct: 61  FADRDLAFARQEPQLGTGHAVMQALPHLEDGVPTLVLYGDVPLTTAASLQRLLAAAGQDK 120

Query: 136 LGVLTVTLDNPTGYGRIVREDGRIKRIVEQKDASQAELAIGEVNTGIIVAPTARLRQWLA 195
           LGVLTVTLD+PTGYGRIVRE+G+I RIVEQKDAS AE AI EVNTGIIVAPTARLR WLA
Sbjct: 121 LGVLTVTLDDPTGYGRIVRENGKITRIVEQKDASPAERAITEVNTGIIVAPTARLRDWLA 180

Query: 196 KLSNHNAQGEYYLTDVIAAAVADGVDVVSAQPDDVAETLGVNSKVQLAELERVHQRNIAH 255
           KLSN NAQGEYYLTDVIAAAVADGVDVVSAQPDDVAETLGVNSKVQLAELERVHQRNIA 
Sbjct: 181 KLSNDNAQGEYYLTDVIAAAVADGVDVVSAQPDDVAETLGVNSKVQLAELERVHQRNIAT 240

Query: 256 RLLEAGVTLADPARIDVRGSLECARDVSIDVNCVFEGQVSIGEGSTIGAHCVIRNARIAA 315
            LLEAGVTLADPARIDVRG+L+C RDVSIDVNCVFEG VSIGEG++IG HCVIRNA IAA
Sbjct: 241 ALLEAGVTLADPARIDVRGTLDCGRDVSIDVNCVFEGCVSIGEGASIGPHCVIRNASIAA 300

Query: 316 GVEIKPFTHIDDAVVGAGGKIGPYARLRPGTELAQDVHIGNFVEVKNSIVGVGSKANHLA 375
           G  IK FTHI+DAVVGAG ++GPYARLRPGTELA +VHIGNFVEVKNS++G+GSKANHLA
Sbjct: 301 GASIKAFTHIEDAVVGAGAQVGPYARLRPGTELADEVHIGNFVEVKNSVIGLGSKANHLA 360

Query: 376 YVGDADVGSGVNVGAGVITCNYDGANKFRTIIEDEVFIGSDSQLVAPVRVGKGATIGAGT 435
           YVGDADVGS VN+GAGVITCNYDGANKFRT IEDE FIGSDSQLVAPV VGKGAT+GAGT
Sbjct: 361 YVGDADVGSKVNIGAGVITCNYDGANKFRTTIEDEAFIGSDSQLVAPVVVGKGATLGAGT 420

Query: 436 TLTKDAPAGQLTLSRAKQLSLPGWQRPVKIKK 467
           TLTKDAPAGQLT+SRAKQLSLPGWQRPVKIKK
Sbjct: 421 TLTKDAPAGQLTISRAKQLSLPGWQRPVKIKK 452


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,547,533
Number of extensions: 72058
Number of successful extensions: 237
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 2
Length of query: 467
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,198,455
Effective search space: 453015990
Effective search space used: 453015990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)