BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4276.p
         (349 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313705|ref|YP_003777797.1| glycosyltransferase [Herbaspiri...   639   0.0  
gi|300313707|ref|YP_003777799.1| alpha-D-mannose-alpha(1-6)phosp...   505   e-144

>gi|300313705|ref|YP_003777797.1| glycosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/349 (85%), Positives = 328/349 (93%)

Query: 1   MKILLLNDEFYTTGASIAMLRLAERLVQNHEVSVLPRIDGQGEVRKQFEAMGIPIVRDLP 60
           MKILLLNDEFYTTGAS AMLRLAERLVQNHEVSVLPRIDGQGE+RKQFEA+GIPIV+DL 
Sbjct: 1   MKILLLNDEFYTTGASTAMLRLAERLVQNHEVSVLPRIDGQGEIRKQFEALGIPIVKDLA 60

Query: 61  AGTDVVISNCILSGSLVGELGARCPVIWWVHEAEIGRDLLLRYPQMAQGFKSASHIVFQT 120
              D+++SNCILSGSLVGEL  RCPVIWWVHEAE+GRDLLLRYPQMAQGFKSASHIVFQT
Sbjct: 61  GEPDLIVSNCILSGSLVGELAPRCPVIWWVHEAEVGRDLLLRYPQMAQGFKSASHIVFQT 120

Query: 121 EFQRLVYGSFLFDSPAMVHVLPFWNDAIYRQQDLQAKPKDKKRIVCIGTIEPRKRMEDTI 180
           EFQR+VYGSFLFDSPAMVHVLPFWNDAIYRQQDLQ KPKDKKRIVCIGTIEPRKRMEDTI
Sbjct: 121 EFQRIVYGSFLFDSPAMVHVLPFWNDAIYRQQDLQPKPKDKKRIVCIGTIEPRKRMEDTI 180

Query: 181 MAVNAMSAEQRANTECLFIGKYLQLGEGARKLSEALPERYRFLGELPNEEVLRYLASADA 240
           +AVNAMS+ QRA  EC+FIGKYLQLG+GARKL+EALPERYRFLGE PNEE LRYLASADA
Sbjct: 181 LAVNAMSSAQRAEIECVFIGKYLQLGDGARKLAEALPERYRFLGEQPNEETLRYLASADA 240

Query: 241 YVLASSSESQPLTIWEAFELDVPVCLSDLETYRHIGLKNGVNALMHPVGNIELLASNLQM 300
           YVLASSSESQPLTIWEAFEL+VPVCLSDLETYRHIGLK+GVNA+MHP+GN+ELLASNLQM
Sbjct: 241 YVLASSSESQPLTIWEAFELEVPVCLSDLETYRHIGLKHGVNAMMHPMGNMELLASNLQM 300

Query: 301 VLHNEDVRRRVTRAGKSLLLKNLTREWSEEFERLVLRTQTMAEIRKMGY 349
           VL+++DVRRR+TRAGKSLLLKNLT +W++ FERL+ R Q    +++MG+
Sbjct: 301 VLYHDDVRRRITRAGKSLLLKNLTSDWADAFERLIYRVQAQIAVKQMGF 349


>gi|300313707|ref|YP_003777799.1|
           alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol
           monomannoside transferase [Herbaspirillum seropedicae
           SmR1]
          Length = 348

 Score =  505 bits (1301), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 238/349 (68%), Positives = 287/349 (82%), Gaps = 1/349 (0%)

Query: 1   MKILLLNDEFYTTGASIAMLRLAERLVQNHEVSVLPRIDGQGEVRKQFEAMGIPIVRDLP 60
           MKILLLNDEFYTTGASIAMLRLAERLVQ HEV V+PR DG+GE+RKQFEA+GIPIV ++ 
Sbjct: 1   MKILLLNDEFYTTGASIAMLRLAERLVQQHEVMVMPRRDGEGEIRKQFEALGIPIVHNV- 59

Query: 61  AGTDVVISNCILSGSLVGELGARCPVIWWVHEAEIGRDLLLRYPQMAQGFKSASHIVFQT 120
              DVV++N +++G  V E G + PV+WW+HEAE+GRDL+LR+P +A  F+ AS IVFQT
Sbjct: 60  TTVDVVVANTLMAGLHVAEAGPKVPVVWWIHEAEVGRDLILRFPALAPAFQHASQIVFQT 119

Query: 121 EFQRLVYGSFLFDSPAMVHVLPFWNDAIYRQQDLQAKPKDKKRIVCIGTIEPRKRMEDTI 180
            +Q+ VY SFLFDSPA  HVLPFWNDAIYRQ+DL  KPK  KRIVCIGTIEPRKRMEDT+
Sbjct: 120 SYQQKVYQSFLFDSPASCHVLPFWNDAIYRQEDLGPKPKRGKRIVCIGTIEPRKRMEDTV 179

Query: 181 MAVNAMSAEQRANTECLFIGKYLQLGEGARKLSEALPERYRFLGELPNEEVLRYLASADA 240
           +AV AM    R   EC+FIGKYL+L E AR++++A P+RYRFLGE  N+EVLRYLASAD 
Sbjct: 180 LAVEAMPPALREEVECVFIGKYLELPEQARRIADAAPQRYRFLGEQANDEVLRYLASADT 239

Query: 241 YVLASSSESQPLTIWEAFELDVPVCLSDLETYRHIGLKNGVNALMHPVGNIELLASNLQM 300
           YVLAS SESQPL+IWEAFEL+VPVCLSDLETY HIGL++G NALMHPVG   +L++NLQ 
Sbjct: 240 YVLASYSESQPLSIWEAFELEVPVCLSDLETYGHIGLQHGRNALMHPVGQTAVLSANLQQ 299

Query: 301 VLHNEDVRRRVTRAGKSLLLKNLTREWSEEFERLVLRTQTMAEIRKMGY 349
           +L    + R + RAGKSLLLKNLTR+W++EFER++ R    AE+RK+GY
Sbjct: 300 LLTRPTLARELARAGKSLLLKNLTRDWADEFERIIARAAMGAELRKLGY 348


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,024,290
Number of extensions: 42416
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,212,660
Effective search space: 318929580
Effective search space used: 318929580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)