BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4273.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313687|ref|YP_003777779.1| aspartate/tyrosine/aromatic ami...   762   0.0  
gi|300312455|ref|YP_003776547.1| aromatic-amino-acid aminotransf...   382   e-107

>gi|300313687|ref|YP_003777779.1| aspartate/tyrosine/aromatic
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/396 (94%), Positives = 385/396 (97%)

Query: 1   MFSHLPPYAGDPILSLMEQFQRDERSNKVNLSIGIYTDGRGVVPVLPTVRAAAAAVAEAG 60
           MFSHLPPYAGDPILSLMEQFQRDERSNKVNLSIGIYTDG+GVVPVLP+VR AAAAVA+A 
Sbjct: 1   MFSHLPPYAGDPILSLMEQFQRDERSNKVNLSIGIYTDGKGVVPVLPSVRTAAAAVAQAD 60

Query: 61  APYVYLPMEGHAAYRQAVAKLLFGADLPSTEHLAIVQTLGGSGALKVGADLIARFFPQPT 120
           APYVYLPMEGH AYRQAVAKLLFGADLP+ EHLAIVQTLGGSGALKVGADLIARFFPQPT
Sbjct: 61  APYVYLPMEGHGAYRQAVAKLLFGADLPAPEHLAIVQTLGGSGALKVGADLIARFFPQPT 120

Query: 121 IWLPDPTWDNHVGIFEGAGFKTERYPYYDAQTKGLDFPAMLAKLDSLSKGAVVLLHPCCH 180
           IWLPDPTWDNH+GIFEGAGFKTERYPYYDAQTKGL+F  MLAK+DSL +GAVVLLHPCCH
Sbjct: 121 IWLPDPTWDNHIGIFEGAGFKTERYPYYDAQTKGLNFEGMLAKIDSLPRGAVVLLHPCCH 180

Query: 181 NPTGVDPTRAQWEEIIAVVEKRGLLPFFDLAYQGFAESLDEDIWPVREAVRRQIPFFLSN 240
           NPTGVDPTRAQWE+I+ VVEKRGLLPFFDLAYQGFAESLDEDIWPVREAVRRQIPFFLSN
Sbjct: 181 NPTGVDPTRAQWEQIVEVVEKRGLLPFFDLAYQGFAESLDEDIWPVREAVRRQIPFFLSN 240

Query: 241 SFSKIFSLYSERIGALSVFCPQSGQAANVLGQLKLTVRRNYSSPARNGALLVAHVLGDDK 300
           SFSKIFSLYSERIGALSVFCPQ+GQAANVLGQLKLTVRRNYSSP RNGALLVAHVLGDDK
Sbjct: 241 SFSKIFSLYSERIGALSVFCPQAGQAANVLGQLKLTVRRNYSSPPRNGALLVAHVLGDDK 300

Query: 301 LATQWRAEVEEMRVRVRDMRVKLASQLKSAVPDQDFSFLLRQNGMFGYTGLSSAQVDRLR 360
           LA QWR EVEEMRVRVRDMRVKLASQLKSAVPDQDFSFLLRQNGMFGYTGLSSAQVDRLR
Sbjct: 301 LAAQWRGEVEEMRVRVRDMRVKLASQLKSAVPDQDFSFLLRQNGMFGYTGLSSAQVDRLR 360

Query: 361 EEFGVYAVGTGRICVAGLNDSNVARVAETMAEVLRG 396
           EEFGVYAVGTGRICVAGLNDSNVARVAETMAEVLRG
Sbjct: 361 EEFGVYAVGTGRICVAGLNDSNVARVAETMAEVLRG 396


>gi|300312455|ref|YP_003776547.1| aromatic-amino-acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  382 bits (981), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/397 (50%), Positives = 258/397 (64%), Gaps = 3/397 (0%)

Query: 1   MFSHLPPYAGDPILSLMEQFQRDERSNKVNLSIGIYTDGRGVVPVLPTVRAAAAAVAEAG 60
           +FS +     DPIL + E +  D+   K NL +G+Y D  G VP+L  V+ A A +A   
Sbjct: 9   LFSAIEMAPRDPILGVTEAYNADQNPAKTNLGVGVYYDDNGKVPLLECVKKAEAELAAKL 68

Query: 61  APYVYLPMEGHAAYRQAVAKLLFGA-DLPSTEHLAI-VQTLGGSGALKVGADLIARFFPQ 118
           AP  YLP++G A Y +AV +L+FGA     TE  AI VQ LGG+GALK+GAD +  F P 
Sbjct: 69  APRTYLPIDGLATYDRAVQELVFGAGSAVVTEKRAITVQALGGTGALKLGADFLKHFSPA 128

Query: 119 PT-IWLPDPTWDNHVGIFEGAGFKTERYPYYDAQTKGLDFPAMLAKLDSLSKGAVVLLHP 177
            T +W+ DP+W+NH  +FE AGFK   YPYYD  T+G++F  ML  L ++  G+VVLLH 
Sbjct: 129 GTEVWISDPSWENHRALFEMAGFKVNAYPYYDPATRGVNFAGMLDALKTMKSGSVVLLHA 188

Query: 178 CCHNPTGVDPTRAQWEEIIAVVEKRGLLPFFDLAYQGFAESLDEDIWPVREAVRRQIPFF 237
           CCHNPTG D T  QW ++I VV  RGL+PF D+AYQGF + + ED   VR       P F
Sbjct: 189 CCHNPTGADLTDDQWTQVIEVVTSRGLVPFLDMAYQGFGDGIAEDGQVVRRFAEAGGPLF 248

Query: 238 LSNSFSKIFSLYSERIGALSVFCPQSGQAANVLGQLKLTVRRNYSSPARNGALLVAHVLG 297
           +SNSFSK FSLY ER+GALS+    + +AA VL QLK  VR NYS+P  +G  +VA  L 
Sbjct: 249 VSNSFSKSFSLYGERVGALSIAAASAEEAARVLSQLKRVVRTNYSNPPIHGGQVVATALA 308

Query: 298 DDKLATQWRAEVEEMRVRVRDMRVKLASQLKSAVPDQDFSFLLRQNGMFGYTGLSSAQVD 357
             +L   W  E+ EMRVR+R+MR  L ++LK   P  DF F+++Q GMF Y+GL+ AQVD
Sbjct: 309 SPELRKLWEDELAEMRVRIREMRQLLVAKLKEKAPGHDFDFVIKQRGMFSYSGLTKAQVD 368

Query: 358 RLREEFGVYAVGTGRICVAGLNDSNVARVAETMAEVL 394
           RLR EF +YAV TGRICVA LN  N+  V + +A+VL
Sbjct: 369 RLRNEFSIYAVDTGRICVAALNTKNIDVVVDAIAKVL 405


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,178,954
Number of extensions: 47527
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)