BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4267.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313681|ref|YP_003777773.1| hypothetical protein Hsero_4398...   709   0.0  

>gi|300313681|ref|YP_003777773.1| hypothetical protein Hsero_4398
           [Herbaspirillum seropedicae SmR1]
          Length = 394

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/386 (90%), Positives = 366/386 (94%)

Query: 1   MQLQLPEPGEDAQAASQTLQHLIAGEIAAAGGWISFERYMELALYAPQVGYYSGGSAKLG 60
           MQLQLPEPGEDAQAAS TLQH IAGEIAAAGGWISF+RYMELALYAPQVGYYSGGSAKLG
Sbjct: 9   MQLQLPEPGEDAQAASHTLQHQIAGEIAAAGGWISFQRYMELALYAPQVGYYSGGSAKLG 68

Query: 61  KEGDFTTAPEISPLYGATLAHLAAEVIAASPQVANVLLEFGAGTGKLAHDILTELQARDA 120
           KEGDFTTAPEISPLYGATLA LAAEVIAASP V NVLLEFGAGTGKLAHDILTELQAR A
Sbjct: 69  KEGDFTTAPEISPLYGATLASLAAEVIAASPSVDNVLLEFGAGTGKLAHDILTELQARAA 128

Query: 121 LPETYFIVEISAQLRARQQEALAAFAPKVQWLDALPETFSGVVVGNEVLDAMPVRLAVKA 180
           LP+ YFIVEISAQLRARQQ+ LAAFAP VQWLDALP TFSGVVVGNEVLDAMPVRLAVKA
Sbjct: 129 LPQRYFIVEISAQLRARQQQTLAAFAPLVQWLDALPATFSGVVVGNEVLDAMPVRLAVKA 188

Query: 181 AEGWLERGVALDGAGQLRFEDRAVAGLPLAQIPDAEDLPSGYLTELSPVAIGFMRTLGRM 240
            +GW ERGVALD  G+LRFEDR+V  LPLAQIPDA +LP GYLTE++PVAIGFM TLGRM
Sbjct: 189 EQGWQERGVALDAEGRLRFEDRSVDDLPLAQIPDAHELPPGYLTEVAPVAIGFMHTLGRM 248

Query: 241 VANGPGALAILPDYGFPAAEYYLYDRDQGTLMCHYRHHAHTDPFYWPGLQDITAHVDFTA 300
           +A+GPGALAILPDYGFPAAEYYL+DRDQGTLMCHYRHHAHTDPFYWPGLQDITAHVDFTA
Sbjct: 249 LASGPGALAILPDYGFPAAEYYLHDRDQGTLMCHYRHHAHTDPFYWPGLQDITAHVDFTA 308

Query: 301 MAVAAVEQGAEVLAYTSQGAFLLNAGIGELLLRTSPEDSARYLPLANGMQKLISPAEMGE 360
           MAVAAVE+GAEVLAYTSQGAFLLNAGIGELLLRTSPEDSARYLPLANGMQKLISPAEMGE
Sbjct: 309 MAVAAVEEGAEVLAYTSQGAFLLNAGIGELLLRTSPEDSARYLPLANGMQKLISPAEMGE 368

Query: 361 LFKVLAIGKHVQWPARMLRHDRTHRL 386
           LFKVLAIGK+V+WP RMLRHDRTHRL
Sbjct: 369 LFKVLAIGKNVEWPQRMLRHDRTHRL 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,275,911
Number of extensions: 56698
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)