BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4265.p (218 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313680|ref|YP_003777772.1| two component response regulato... 424 e-120 gi|300311750|ref|YP_003775842.1| transcription response regulato... 209 2e-55 gi|300309981|ref|YP_003774073.1| two component response regulato... 189 2e-49 gi|300313818|ref|YP_003777910.1| two component transcription reg... 173 8e-45 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 172 2e-44 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 424 bits (1091), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/218 (97%), Positives = 213/218 (97%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLLVEDDPMVGEAVRKGLRQDGF IDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVLRTLRERGN IPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GRAESLVQVREV+LNPATHEVTV G PVNLSAREF LLQAFMDRPGVVLSRAQLEEKLYG Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA 218 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA Sbjct: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA 218 >gi|300311750|ref|YP_003775842.1| transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 209 bits (531), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 156/217 (71%), Gaps = 2/217 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+GE VR L+ +G+ DWV+ G +A +AL + Y LLLDLGLP DGL Sbjct: 1 MRILLVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVLR LR + +PVL+ TARD + DR+ GLDAGADDYL+KPF + EL AR+RA+ RR++ Sbjct: 61 AVLRQLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRS 119 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNP-VNLSAREFALLQAFMDRPGVVLSRAQLEEKLY 179 G A + ++ L+ A P V LSAREFALL A M RPG +LSRA+LEEKLY Sbjct: 120 GAASDQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLY 179 Query: 180 GWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 GW + +ESNAVE IH+LR+K+ + IKNVRG+G+LV Sbjct: 180 GWGEEVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLV 216 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 189 bits (479), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 141/218 (64%), Gaps = 2/218 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LL EDD ++ + + + LR G+ D V++G AD AL T+D+ +L+LDLGLP+ GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLR LR R + +PVLI TA D+V RV GLD GADDY+ KPF L EL AR+RAL+RR A Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 G ++++ + + +G + LSARE LL+ + R G ++S+ QL + L Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 181 WDDSIESNAVEVHIHALRKK--VGSDFIKNVRGVGYLV 216 W + + +NA+EV++H LRKK VG I VRG+GY + Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 173 bits (439), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 139/223 (62%), Gaps = 5/223 (2%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVED + + K +R T++ +G AD L T+DYA+++LDL LP+ DG+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VL+ +R RGN PVLI TAR +ADRV+GL+ GADDYL KPF+LEEL AR++AL RR Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 V + + + T GG + L+ RE A+L+A + R G + + +L ++++ Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 WDDSIESNAVEVHIHALRKKV-----GSDFIKNVRGVGYLVPA 218 +D+ +A+E++IH LRKK+ G I +RG+GYL+ A Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/219 (43%), Positives = 136/219 (62%), Gaps = 5/219 (2%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 M +LLVED+P G+ +R+GL + GF +DWVQ G RT DY +++LD+ LP +G Sbjct: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR LR R + PVL TARD V DRV GL+ GADDYL+KPF EL AR+R L RR Sbjct: 61 DILRELR-RTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 R L++ +VVL+ +VT G ++L+A+EFALL + RPG VLSR Q+ +++ Sbjct: 120 SREVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 Query: 181 WDDSIESNAVEVHIHALRKKVGSDF----IKNVRGVGYL 215 + ++N V+V + LR K+ F + V G+GY+ Sbjct: 180 MNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYV 218 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 694,213 Number of extensions: 28919 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 36 Length of query: 218 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 136 Effective length of database: 1,231,600 Effective search space: 167497600 Effective search space used: 167497600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)