BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4261.p
         (173 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313676|ref|YP_003777768.1| NADPH-quinone reductase [Herbas...   302   1e-83

>gi|300313676|ref|YP_003777768.1| NADPH-quinone reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  302 bits (773), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 153/173 (88%)

Query: 1   MPKVLILYAHPAAELSRTNRLMLQAAARLPEVQIHDLYERYPDFHIDVEHEQQLLTQAEL 60
           MPK LILYAHP AELSRTNRL+L AAARLPEVQIHDLYE YPDFHIDVEHEQQLL   EL
Sbjct: 1   MPKALILYAHPTAELSRTNRLLLDAAARLPEVQIHDLYEHYPDFHIDVEHEQQLLGTVEL 60

Query: 61  IVMQHPIHWYSMPALQKQWLDQVLARGWAFGHDGHALHGKRFWLVASTGGEDASYRSDGR 120
           IVMQHPIHWYSMPALQKQWLD VL RGWAFGH GHALHGKRFWLVA+TGGE+A+YR  GR
Sbjct: 61  IVMQHPIHWYSMPALQKQWLDSVLTRGWAFGHGGHALHGKRFWLVATTGGEEAAYRPQGR 120

Query: 121 HGHPFADFLPPYQQTARLCGMSWVEPLILHGAHHVPPVEFQHHVQRYLEGLQA 173
           HGH FADFLPPYQQTA LCGM W EPLILHGAHH+PP +FQ H+Q YL GLQA
Sbjct: 121 HGHRFADFLPPYQQTAALCGMQWQEPLILHGAHHIPPEQFQRHLQHYLAGLQA 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 643,633
Number of extensions: 27473
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,245,805
Effective search space: 117105670
Effective search space used: 117105670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)