BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4260.p
         (381 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313675|ref|YP_003777767.1| glutamine amidotransferase [Her...   620   e-179

>gi|300313675|ref|YP_003777767.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  620 bits (1598), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/384 (83%), Positives = 336/384 (87%), Gaps = 9/384 (2%)

Query: 1   MSDIQDSEANLPPDRTSTSTASGAAKPVSADASGAAAASQNPVQPQVSTDHAVTPVQPGP 60
           MSDIQDSEANLPPDR ST      A+PVSADASG  AASQ P     +           P
Sbjct: 1   MSDIQDSEANLPPDRPST-----PAQPVSADASGTPAASQTPAPAAAAPAAPAPVAAAAP 55

Query: 61  GAQPAAEA---TQAQAHAQASPQAQQSPYSSLPPPPHHAGDAPWAQTWRFLTARLRQMSD 117
            A P A+    +     AQ + Q+  SPYS++PPP HHAGDAPWAQTWRFLTARLRQ+SD
Sbjct: 56  PAVPPAQPSPESAPAGQAQQAQQSAHSPYSAVPPP-HHAGDAPWAQTWRFLTARLRQLSD 114

Query: 118 KAGRRVMQRTLKIGVSARIFHPESGAKGLRSKTLQYLEESIAQWVMSRDVLVFMIPTVNT 177
           KAGRRVMQRTLKIGVSARIFHPE+GAKGLRSKTLQYLEESIAQWVMSRDVLVFMIPTVNT
Sbjct: 115 KAGRRVMQRTLKIGVSARIFHPEAGAKGLRSKTLQYLEESIAQWVMSRDVLVFMIPTVNT 174

Query: 178 NGLVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQAATRPEWSGDRVRDMYELELLHEF 237
           NGLVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQ+ATRPEWSGDRVRDMYELELLHEF
Sbjct: 175 NGLVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELELLHEF 234

Query: 238 IEAGKPVLGICRGCQLINVAFGGTLYQDIASDVPTAIPHVNEQYDSNYHALHFPQGSSLA 297
           IEAGKPVLGICRGCQLINVAFGGTLYQDIA+DVPTAIPHVNEQYDSNYH LHFPQGSSLA
Sbjct: 235 IEAGKPVLGICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNYHTLHFPQGSSLA 294

Query: 298 GMVKTENAMVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEFHRA 357
            ++K ENA+VNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEFHRA
Sbjct: 295 NLLKAENAVVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEFHRA 354

Query: 358 GGAELLDCTPILDSFLRAARETRF 381
           G  ELLDCTP+LDSFLRAARETRF
Sbjct: 355 GSPELLDCTPVLDSFLRAARETRF 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,042,226
Number of extensions: 40997
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,207,925
Effective search space: 355129950
Effective search space used: 355129950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)