BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4254.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312978|ref|YP_003777070.1| ADP-heptose synthase [Herbaspir...    84   4e-17

>gi|300312978|ref|YP_003777070.1| ADP-heptose synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 146/324 (45%), Gaps = 19/324 (5%)

Query: 170 KDLRQTMEKFKGLRVAVLGDLIVDEYVSCEALGMSQEDPTLVVTPILLERFIGGAGIVAS 229
           KDL   +  +   R+ V+GD+++D Y   E   +S E P  VV     E  +GGA  VA 
Sbjct: 3   KDL---VSAWSNARILVVGDVMLDRYWFGEVNRISPEAPVPVVRVERKEERLGGAANVAR 59

Query: 230 HARTLGAQVNYFSVAGKDAAADFAREKLSEYKVTATIFEDESRPTTLKQRFRAAGKTLLR 289
           +  +LGAQ     V G D  A      L E  + + +  D S  T +K R     + L+R
Sbjct: 60  NIASLGAQTALLGVTGDDEPARVMDAMLREMGIASHLNRDPSISTIVKLRVIGRQQQLVR 119

Query: 290 VSHLRQHDIEQRLAQRFVDAVKAKLDACDLVIFSDFNYGCLPQVVVDQLVAACTERGIPF 349
           +    +   +  L  +         D  D+++FSD+  G L  V V +++A   + G   
Sbjct: 120 ID-FEEAPTDTVLRDKLTQFNTLVAD-YDVILFSDYAKGSL--VNVAEMIATARKLGKRI 175

Query: 350 VADSQSSSQMGDVSRFKGAMLLTPTEREARLAVRDYSS--GLVVLAEKLRQRSQAENIIL 407
           + D +      D  R+ GA LLTP + E    V  + +   L   A+KLR   Q E ++L
Sbjct: 176 LVDPKGD----DFQRYVGASLLTPNKSELVRIVGQWKNEDDLTARAQKLRAELQLEALLL 231

Query: 408 TLGAEGILAHAQSEGELAWLTDRLPAFNSSPKDTAGAGDSFLTCTSMAMTVGADIWQSMY 467
           T   EG+  +   +GE+       P       D +GAGD+ +   ++ +  GA + +++ 
Sbjct: 232 TRSEEGMSLY--RDGEVT----HFPTMAREVFDVSGAGDTVIGTLAVMLGAGASLVEAVT 285

Query: 468 LGSIAAACQVSRVGNIPLSASDLM 491
           + + A    V ++G   ++  +L+
Sbjct: 286 MANRAGGIVVGKLGTATVTREELL 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,515,865
Number of extensions: 63869
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)