BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4250.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310038|ref|YP_003774130.1| nucleoside-diphosphate-sugar py...    76   3e-15
gi|300313699|ref|YP_003777791.1| phospho-sugar nucleotidyltransf...    55   8e-09

>gi|300310038|ref|YP_003774130.1| nucleoside-diphosphate-sugar
           pyrophosphorylase subunits gamma/epsilon [Herbaspirillum
           seropedicae SmR1]
          Length = 238

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 1   MRALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDILINTHYRADLV 60
           M+A++ AAG G R+RPLTD  PK L+ + GRPL+ + I +L+R G+ +I+IN  +   ++
Sbjct: 1   MKAMIFAAGRGERMRPLTDSCPKPLLKVRGRPLIVWQILSLVRAGITEIVINHAHLGQMI 60

Query: 61  ERYIA-ASTWCDRVTLVHEPQLLGTAGTALTHRQFFGEQPFLLAHADNLT-RFDCRDFLS 118
           E  +   S +  R+    E   L TAG     R   GEQPF+    D     FD  + L+
Sbjct: 61  EDTLGDGSRFGARLLYSPEGTALETAGGIAQARHLLGEQPFIAVSGDIWCPHFDYSELLT 120

Query: 119 T 119
            
Sbjct: 121 V 121


>gi|300313699|ref|YP_003777791.1| phospho-sugar
           nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 54.7 bits (130), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 4/199 (2%)

Query: 3   ALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDILINTHYRADLVER 62
           A++LA GLGTRLR     LPK + PI GRP L+Y ++  + QG+   ++   YR + +  
Sbjct: 6   AVILAGGLGTRLRSAVPDLPKPMAPIEGRPFLEYQLDYWIAQGIAHFVLAVGYRHEAISG 65

Query: 63  YIAASTWCDRVT-LVHEPQLLGTAGTALTHRQFFGEQPFLLAHADNLTRFDCRDFLSTHR 121
           +        R+  +V E  L    G  L  ++   +Q FLL + D  T F  +       
Sbjct: 66  HFGQQYRGARLDYVVEETPLGTGGGLLLALQRLPADQRFLLLNGD--TYFAVQLPALEQF 123

Query: 122 NRPHGTALTMMLFETPDPQSCGIVELDTSGVVQVFHEKQPNPPGNLANAAVYVVEPEVLT 181
                +     LF T        + +   G +      Q      LAN  VY + P  L 
Sbjct: 124 ALQQDSDWCFSLFRTGQTSRYLGMGVAADGRITELKSSQDGDE-CLANGGVYCIHPRALA 182

Query: 182 WLASLGRHEIDFSTEVIPR 200
            L            ++ PR
Sbjct: 183 SLGVQAGASTSLENDLFPR 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,796
Number of extensions: 31320
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)