BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4242.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate isome...   107   6e-25
gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase [Herba...    75   2e-15

>gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  107 bits (268), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 41  WLQGRQVFLCGNGGSAGNAIHLANDFLYGIAKRTGGGMRVSALSANAAVLTCLANDIGYD 100
           +  GR++++ GNGGSA +A HLA +F+  +A R    +   AL+ ++++LT + ND GY+
Sbjct: 43  YRNGRRIYIAGNGGSAADAQHLAAEFVSKLA-RDRAPLPAEALTTDSSILTAIGNDYGYE 101

Query: 101 HIYSEQLAVQAQPGDLLIALSGSGNSANILRALEQARKMDVISCAILGYSGGKAKALCDI 160
            ++S QLA +A  GD+ + ++ SG S NILRALEQ R M V S    G  GG A+ L D 
Sbjct: 102 QVFSRQLAGKAVAGDIFLGITTSGRSPNILRALEQCRAMGVPSILFTGRDGGPARPLADH 161

Query: 161 PIHFAVDDMQIAEDMQVIVGHMVMQ 185
            I    +     +++ +++ H + +
Sbjct: 162 AIVVPGEATSTIQELHIVLAHTLCE 186


>gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 75.5 bits (184), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 44  GRQVFLCGNGGSAGNAIHLANDFLYGIAKRTGGGMRVSALSANAAVLTCLANDIGYDHIY 103
           G ++  CGNGGSA ++ H A + L G  +R    +   AL+ + ++LT + ND  Y  I+
Sbjct: 42  GNKILACGNGGSAADSQHFAAE-LVGRFERERLPLPALALTTDTSILTAVGNDYSYQEIF 100

Query: 104 SEQLAVQAQPGDLLIALSGSGNSANILRALEQARKMDV 141
           S+Q+    Q GD+L+A S SGNS NIL A+E A + D+
Sbjct: 101 SKQVQAFGQSGDILLAFSTSGNSGNILAAIEVAHERDM 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 627,992
Number of extensions: 25569
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)