BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4239.p
         (520 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312062|ref|YP_003776154.1| membrane-anchored group 1 glyco...    65   2e-11

>gi|300312062|ref|YP_003776154.1| membrane-anchored group 1
           glycosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 132/309 (42%), Gaps = 28/309 (9%)

Query: 235 LLHRYTPGLMSLDVLRTIFSSSIPIIYESDDLLNDIPADHPEAQQGA---AWKSGIE-FS 290
           +LH ++P L ++  LR      IP++YE      D   DH  ++ G         +E ++
Sbjct: 98  VLHAHSPALNAIAALRVGRRLGIPVVYEVRAFWEDAAVDHGTSRAGGLRYRLTRALETYA 157

Query: 291 VKHAKAVVVSTEFLAAKYRELN---AQVHVLPNYIDFDLFYRPVPQHQNP--------DG 339
           +K A AV    E L A         A++ V+PN ++ D F   + Q  +P        +G
Sbjct: 158 LKRADAVTTICEGLRADIAARGVPLAKMTVIPNAVNIDDF--SLGQQADPALARQLGLEG 215

Query: 340 RINIGLLGSSIQPSNFALVDQALRALVERYGARLHIDFVGWECPQGWAGHPLTTFHTFVH 399
           +  +G +GS        ++ QAL  L+      + +  VG   PQ  A H L      V 
Sbjct: 216 KTLLGFIGSFYAYEGLPVLVQALPQLLA-GNPDVRLLLVGG-GPQERALHALAA-ELGVS 272

Query: 400 QYVDYAAQL------RQWNW-DIALIPLASDQYNQCKSYIKWLDYSAAGIASIFSDVSVY 452
             V +A ++      R +N  D+ + P    +     + +K L+  A G   + SDV  +
Sbjct: 273 DKVVFAGRVPHEQVQRYYNLIDVLVYPRLKMRLTDLVTPLKPLEAMAQGRLVVASDVGGH 332

Query: 453 NQVVTHDVTGLLM-PNSSQAWLDAITQLIESPEKRHALAAAGQQEVREGFDLAAKAVHYN 511
            ++++   TG+L    S +A    +  L+  P +   L AAG+  V    + AA    Y 
Sbjct: 333 RELISDGRTGVLFAAGSPEALAQKVLALLAEPARWPQLRAAGRHFVETERNWAASVARYQ 392

Query: 512 EVYSRCLKA 520
           ++Y R + A
Sbjct: 393 QIYPRLVAA 401


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,621,355
Number of extensions: 67035
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,198,455
Effective search space: 516534105
Effective search space used: 516534105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)