BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4237.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313694|ref|YP_003777786.1| dTDP-6-deoxy-D-glucose-3,5 epim...   102   2e-23

>gi|300313694|ref|YP_003777786.1| dTDP-6-deoxy-D-glucose-3,5
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 181

 Score =  102 bits (254), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 6/173 (3%)

Query: 3   LQIMPTGIDGAVLISSRRRGDARGSFARWFCEEELAPVLGTS-HIVQINHSFTEEVGSVR 61
           ++I  T + G +++      DARG F   F   +   + G S   VQ N S ++  G +R
Sbjct: 1   MKIAATLLPGVLVLEPTVFEDARGHFFEAFNARQFKALTGLSPEFVQDNQSHSK-AGVLR 59

Query: 62  GMHFQYAPMAEKKLIRCLAGRVFDVVLDLRAGSPTFLQWRGIELAAGDDRALLIPEGCAH 121
           G+H+Q     + KL+R + G + DVV+DLR  SP+F QW  + L+A + R L IPEG AH
Sbjct: 60  GLHYQLH-QPQGKLVRVIQGEITDVVVDLRRQSPSFGQWASVTLSAQNRRQLWIPEGFAH 118

Query: 122 GFQVLQGGAALLYLHTAPYAPHAEGGVRHDDPRVAIAWPL--PPCNLSPRDLQ 172
           GF V    A + Y  TA ++   E  +R DDP +AI W L  PP  LS +D Q
Sbjct: 119 GFHVRSDIADVQYKTTAYWSAPDERCIRWDDPDLAIDWQLTAPPL-LSDKDRQ 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.142    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 668,484
Number of extensions: 29554
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)