BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4234.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313656|ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductas...   279   2e-76
gi|300313503|ref|YP_003777595.1| dTDP-4-dehydrorhamnose reductas...    62   6e-11

>gi|300313656|ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  279 bits (714), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/296 (52%), Positives = 196/296 (66%), Gaps = 4/296 (1%)

Query: 5   RILLTGASGQIGGELLRRLRAMPAGVEVIAPTRAQLDLADLDALRAAVRHAQPDLILHPA 64
           RILLTGASGQ+G ++L+ + A     E++AP+  +LDLAD  AL++ ++ A+P LI++ A
Sbjct: 2   RILLTGASGQLG-QVLQPMLARHG--ELLAPSSRELDLADRQALQSFLQQARPGLIVNAA 58

Query: 65  AYTAVVKAESEPELARRLNAEAPAVLAEEAARLGAALVHFSTDYVFDGRHDGRYTEDMPT 124
           AYTAV KAES+   A  +NA AP +LA++A  LGA LVHFSTDYVFDG+    Y E  PT
Sbjct: 59  AYTAVDKAESDVARAEAVNALAPMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDPT 118

Query: 125 NPLNVYGATKREGELTIAASGAAYWILRTSWVYNLAGNNFMKTAIRLAQQKESYTIVGDQ 184
            PLNVYG TK  GE  IAA   AYWILRTSWVY   G+NF+KT  RLA ++E  T+V DQ
Sbjct: 119 GPLNVYGRTKLAGEQGIAAHCDAYWILRTSWVYGCYGSNFLKTMWRLAGEREYLTVVDDQ 178

Query: 185 FGAPTWASTIAAVCCRMLAGAGGGREKVAATSGIYHLTAAGATSWHGYASLIASELMARG 244
            GAPTW  TIA    RMLA     ++ V  T+G+YHL+A GATSWHG+A  I   L A+G
Sbjct: 179 IGAPTWTHTIADTLARMLAHGADAQQSVRDTTGLYHLSAGGATSWHGFAQRILQLLRAQG 238

Query: 245 VTLKLKGLEQITPVPTSSYPTPPERPLNSRLDCSKLERSFGLTLPAWDEDALACLQ 300
            T  L     + P+ + +YP   +RP NSRLD   L R+F L+LP W+E    CL 
Sbjct: 239 ETALLDP-ALVRPIASDAYPAIAQRPRNSRLDTGLLRRTFSLSLPTWEEALERCLH 293


>gi|300313503|ref|YP_003777595.1| dTDP-4-dehydrorhamnose reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 5   RILLTGASGQIGGELLRRLRAMPAGVEVIAPTRAQ-----------LDLADLDALRAAVR 53
           ++L+ GASG IG  +   L   P G EV A  RA+           +DL++ D +     
Sbjct: 2   KVLVLGASGMIGRTMFHVLSQRP-GWEVCAIVRAKTFEVGAPVVTGIDLSNQDHMERLFA 60

Query: 54  HAQPDLILHPAAYTAVVKAESEPELARRLNAEAPAVLAEEAARLGAALVHFSTDYVFDGR 113
             +PD++++ A  T  +   +    A  +NA  P  LA+      A L+H STD VF G 
Sbjct: 61  QRRPDVVVNCAGLTKHLPEGNAHIPALTMNALLPHRLAQLCDIADARLIHVSTDCVFSG- 119

Query: 114 HDGRYTEDMPTNPLNVYGATKREGELTIAASGAAYWILRTSWVYNLAGNNFMKTAIRLAQ 173
             G Y E    +  +VYG TK  GE+T   +G A   LRTS + +  G  F      LAQ
Sbjct: 120 DAGNYKEQDTPDATDVYGRTKALGEVT---AGNAL-TLRTSTIGHEHGTQFGLLEWFLAQ 175

Query: 174 QK 175
            +
Sbjct: 176 TQ 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 889,183
Number of extensions: 32400
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)