BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4232.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...    77   2e-15

>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 39/235 (16%)

Query: 10  RKGIILAGGSGTRLYPATTVVSKQLMPIYDKPMVYYPLSSLMLAGIRDILLIS------- 62
           +K +    G G+R  PAT    K+++PI DKP+++Y +   + AGI +++ I+       
Sbjct: 7   KKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGRNKRAI 66

Query: 63  --------------TPQDTPRFAELLGDGQQWGLNISYAVQPSPDGLAQAFLIGRDFIGA 108
                               +  E++ +     +N  +  Q  P GL  A L  R  +G 
Sbjct: 67  EDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCARPVVGE 126

Query: 109 DPSALILGDNIFYGRDLEPPMRVANARL------DGATIFAYH---VQDPERYGVVEFD- 158
           +P A++L D+     D +  ++   A++      +G ++ A       D ++YG+V    
Sbjct: 127 EPFAVLLADDFM---DTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSATP 183

Query: 159 ---SQRRVIGIEEKPL--QPKSNFAVTGLYFYDNQVIDIAREIKPSARGELEITD 208
              +  RV  I EKP   +  S  AV G Y  +N++ D    I   A GE+++TD
Sbjct: 184 YQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTD 238


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 987,538
Number of extensions: 44108
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)