BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4229.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313691|ref|YP_003777783.1| CDP-glucose-4,6-dehydratase [He...   564   e-162
gi|300313504|ref|YP_003777596.1| galactose-1-phosphate uridylylt...    62   8e-11

>gi|300313691|ref|YP_003777783.1| CDP-glucose-4,6-dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  564 bits (1454), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/358 (77%), Positives = 305/358 (85%), Gaps = 1/358 (0%)

Query: 14  MSNFWRGKRVFITGHTGFKGGWLSLWLHMMGARVSGYSLPAPTNPSLFHLARLHNCLHTT 73
           M+NFWR KRVFITGHTGFKG WL+LWLH+MGA+VSGYSLPAPT+PSLFHLARLHNC+ TT
Sbjct: 1   MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT 60

Query: 74  TGDVRDPLHLAHSMAAAQADVVFHLAAQALVRDSYLTPVDTYATNVMGTVHVLEAVRQTP 133
           TGDVRDP HLA +MAA Q DVVFHLA Q  +  SYLTP+DT+ATNVMGT H+LEAVR TP
Sbjct: 61  TGDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTP 120

Query: 134 SVRSVVVVTSDKCYENREWLWGYREDEPMGGHDPYSSSKGVAELVTAAYRRSFFGKAGNE 193
           SVR+VVVV+S+KCYENREWLWGYRED+PMGGHDP+SSSKG AELVTAAYRRSFF    + 
Sbjct: 121 SVRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDS 180

Query: 194 QVGIASVRAGNVIGGGDFAADRLIPDFIRALEKDAPVSIRNPTAVRPWQFVLEPLSGYLQ 253
            VG+ASVR GNVIGGGDFAADRLIPDFIRALE D PV+IR P AVRPWQFVLEPLSGYLQ
Sbjct: 181 PVGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQ 240

Query: 254 IAQLLYEHGSQYAEGWNFGPAETDPKTVGQLCTTFNQALQQHQVAPARVVLEPQANAPHE 313
           I ++LYEHG+ YAE WNFGP +TD +TV QLC TFN +LQ++ V P  V LE QA A   
Sbjct: 241 IGKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLE-QAGATLS 299

Query: 314 AHLLRLDISKARQRLGWEPRMELSAALELTAQWYAGYLNNEDLRALSEEQIHFYQSLT 371
             +LRLD SKARQRL W PRMEL  ALELTAQWYAGYLNNEDLRALSE QI FYQSLT
Sbjct: 300 EAVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSLT 357


>gi|300313504|ref|YP_003777596.1| galactose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 109/255 (42%), Gaps = 32/255 (12%)

Query: 23  VFITGHTG-FKGGWLSLWLHMMGARVSGYSLPAPTNPSLFHLARLHNCLHTTTGDVRDPL 81
           + ITG TG F    L+ +L+     +  +S        L  +A  +  L    GDVRDP 
Sbjct: 7   LMITGGTGSFGQTVLNRFLNTGVREIRVFSRDEKKQEDL-RIALNNEKLRFYIGDVRDPD 65

Query: 82  HLAHSMAAAQADVVFHLAAQALVRDSYLTPVDTYATNVMGTVHVLEAVRQTPSVRSVVVV 141
            L  +M     D VFH AA   V      P++   TNV+GT +VL  V     VR VVV+
Sbjct: 66  SLRAAMKGV--DYVFHAAALKQVPSCEFYPMEAVKTNVIGTENVLR-VSSECGVRRVVVL 122

Query: 142 TSDKCYENREWLWGYREDEPMGGHDPYSSSKGVAELVTAAYRRSFFGKAGNEQVGIASVR 201
           ++DK               P+   +    SK +AE V  A  R+   +   E V  A+ R
Sbjct: 123 STDKAV------------YPI---NAMGISKAMAEKVMVAAART---QRQGETVFCAT-R 163

Query: 202 AGNVIGGGDFAADRLIPDFIRALEKDAPVSIRNPTAVRPWQFVLEPLSGYLQIAQLLYEH 261
            GNV+     +   +IP F+  ++ + P++I +P   R     L  L   + +    ++H
Sbjct: 164 YGNVMA----SRGSVIPLFVSQIKAEKPITITDPNMTR----FLMSLEDSVDLVLYAFQH 215

Query: 262 GSQYAEGWNFGPAET 276
           G Q        PA T
Sbjct: 216 GQQGDIFVQKAPAST 230


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,232,938
Number of extensions: 51896
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)