BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4218.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...   532   e-152
gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   132   2e-32

>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  532 bits (1371), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/270 (92%), Positives = 265/270 (98%)

Query: 1   MAKKIGPQFMVHPKYLLKESDATTKPLSSGNKEADRATVQRLAAEIGLQQQMLYAGHKHK 60
           MAKKIGPQF+VHPK++LKE++A+TKPLSSG+KE DRA VQRL+  IG+QQQMLYAGHKHK
Sbjct: 1   MAKKIGPQFIVHPKFVLKETEASTKPLSSGDKEKDRANVQRLSGLIGVQQQMLYAGHKHK 60

Query: 61  VLVVLQGMDTSGKDGTVNDVFAAVNPQGIRIANFKGPTAIELAHDYLWRVHAQVPVAGEI 120
           VLVVLQGMDTSGKDGTVNDVFAAVNPQGIRI+NFKGPTAIELAHDYLWRVHAQVPVAGEI
Sbjct: 61  VLVVLQGMDTSGKDGTVNDVFAAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEI 120

Query: 121 AVFNRSHYEDVLITRVHDWIDDKECKRRYRQINDFERMLWETGTVVLKFFLHISKAEQKA 180
           AVFNRSHYEDVLITRVHDWIDDKEC+RRYRQINDFERMLWETGTVVLKFFLHISKAEQK+
Sbjct: 121 AVFNRSHYEDVLITRVHDWIDDKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKS 180

Query: 181 RLQSRIDDPNKHWKFDPQDLAERKYWDAYQLRYQEVLRATSTLHAPWYVVPADSKTHRNL 240
           RLQSRIDDPNKHWKFDPQDLAERK+WDAYQ RYQEVLRATSTLHAPWYVVPADSKTHRNL
Sbjct: 181 RLQSRIDDPNKHWKFDPQDLAERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNL 240

Query: 241 LVANVILETLQKLKLKFPDPKPELKNLKFD 270
           +VANV+LETLQKLKLKFPDPKPELKNLKFD
Sbjct: 241 VVANVVLETLQKLKLKFPDPKPELKNLKFD 270


>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  132 bits (333), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 120/241 (49%), Gaps = 13/241 (5%)

Query: 21  DATTKPLSSGNKEADRA-------TVQRLAAE-IGLQQQMLYAGHKHKVLVVLQGMDTSG 72
           D  T   SS + E ++         + RL  E + LQ  ++  GHK  V++V +G D +G
Sbjct: 33  DPVTGEFSSAHGEEEKEYRRLYFRELFRLQGELVKLQDWVVQTGHK--VVIVFEGRDAAG 90

Query: 73  KDGTVNDVFAAVNPQGIRIANFKGPTAIELAHDYLWRVHAQVPVAGEIAVFNRSHYEDVL 132
           K G +  +   +NP+  R+A    P   E    Y  R  + +P AGEI +F+RS Y    
Sbjct: 91  KGGVIKRITQRLNPRVARVAALPAPNDRERTQWYFQRYVSHLPAAGEIVLFDRSWYNRAG 150

Query: 133 ITRVHDWIDDKECKRRYRQINDFERMLWETGTVVLKFFLHISKAEQKARLQSRIDDPNKH 192
           + RV  +  D++ +  +R + +FERML   G  V+K++  I+  EQ  R  SRI DP K 
Sbjct: 151 VERVMGFCSDEQYEEFFRSVPEFERMLTRAGIQVIKYWFSITDEEQHLRFLSRIHDPLKQ 210

Query: 193 WKFDPQDLAERKYWDAYQLRYQEVLRATSTLHAPWYVVPADSKTHRNLLVANVILETLQK 252
           WK  P DL  R+ W+ Y    + +L  T    APW+VV A  K    L   N I   LQ+
Sbjct: 211 WKLSPMDLESRRRWEEYTKAKEVMLERTHIPEAPWWVVQAVDKKKARL---NCIHHLLQQ 267

Query: 253 L 253
           +
Sbjct: 268 M 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 842,259
Number of extensions: 33497
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)