BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4214.p
         (577 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313639|ref|YP_003777731.1| arginyl-tRNA synthetase [Herbas...  1096   0.0  

>gi|300313639|ref|YP_003777731.1| arginyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 577

 Score = 1096 bits (2834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/577 (96%), Positives = 569/577 (98%)

Query: 1   MLAQQKQRISDLFSTALQPLLAGSDLTPTITLERPRDASHGDIACNIAMQLAKPLKKNPR 60
           MLAQQKQRISDLFS+ALQPLLA S LTPTITLERPRDASHGD+ACNIAMQLAKPLKKNPR
Sbjct: 1   MLAQQKQRISDLFSSALQPLLAESGLTPTITLERPRDASHGDVACNIAMQLAKPLKKNPR 60

Query: 61  ELAQAIVTAVMADPAREGLVESVEIAGPGFINLRVAAAAKQAVVKVIHEQGEAFGRGTAG 120
           ELAQAIV AVMADPARE LVESVEIAGPGFINLRVAAAAKQAVVKVIHEQGEA+GRG+AG
Sbjct: 61  ELAQAIVAAVMADPAREDLVESVEIAGPGFINLRVAAAAKQAVVKVIHEQGEAYGRGSAG 120

Query: 121 AGQKVLVEFVSANPTGPLHVGHGRQGALGDALSSLLEVQGFEVLREFYYNDAGVQIATLA 180
           AG+KVLVEFVSANPTGPLHVGHGRQGALGDALSSLLE QG++VLREFYYNDAGVQIATLA
Sbjct: 121 AGKKVLVEFVSANPTGPLHVGHGRQGALGDALSSLLEAQGYDVLREFYYNDAGVQIATLA 180

Query: 181 TSVQARARGFKPGDAEWPESAYNGDYIADIARDFLDQKTVSASDGEPVTGSGNVEDMESI 240
           TSVQARARGFKPGDAEWPESAYNGDYIADIARDFLD+KTVSASDGEPVTGSG V+D+ESI
Sbjct: 181 TSVQARARGFKPGDAEWPESAYNGDYIADIARDFLDKKTVSASDGEPVTGSGEVDDIESI 240

Query: 241 RRFAVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDALVAAGKTYEQDGALWL 300
           RRFAVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDAL+AAGKTYEQDGALWL
Sbjct: 241 RRFAVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDALIAAGKTYEQDGALWL 300

Query: 301 RTTDYGDDKDRVMKKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRAGL 360
           RTTDYGDDKDRVMKKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRAGL
Sbjct: 301 RTTDYGDDKDRVMKKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRAGL 360

Query: 361 QAVGVGIPLGYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWSAGEPVEGQERDL 420
           QA GVGIP GYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWSAGEPVEGQERDL
Sbjct: 361 QAAGVGIPQGYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWSAGEPVEGQERDL 420

Query: 421 TRGRDAVRFFLISRKADTEFVFDVDLALAQSDENPVYYVQYAHARICTVLGKSGVDEEAL 480
           TRGRDAVRFFLISRKADTEFVFDVDLALAQSDENPVYYVQYAHARICTVLGKSGVDEEAL
Sbjct: 421 TRGRDAVRFFLISRKADTEFVFDVDLALAQSDENPVYYVQYAHARICTVLGKSGVDEEAL 480

Query: 481 KTSADLSLLTAPREASLLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERV 540
           K+SADLSLLTAPREA+LLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERV
Sbjct: 481 KSSADLSLLTAPREATLLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERV 540

Query: 541 LVDDVPTRSARLALLSATRQVLRNGLALLGVSAPARM 577
           LVDDVPTRSARLALLSATRQVLRNGLALLGVSAPARM
Sbjct: 541 LVDDVPTRSARLALLSATRQVLRNGLALLGVSAPARM 577


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,804,100
Number of extensions: 77063
Number of successful extensions: 272
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 487
Effective length of database: 1,193,720
Effective search space: 581341640
Effective search space used: 581341640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)