BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4210.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferas...   585   e-168
gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferas...    91   1e-19

>gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  585 bits (1508), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/316 (93%), Positives = 309/316 (97%)

Query: 1   MKIIFAGTPEFAAVALEALYAAGHQITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA 60
           MKIIFAGTPEFAAVALEALYAAGH+ITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA
Sbjct: 1   MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA 60

Query: 61  QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRYGCINIHGSLLP 120
           QPVSLRL+GKYP+VAQEAHALL+STPHDVM+VAAYGLILPRSVLDIPRYGCINIHGSLLP
Sbjct: 61  QPVSLRLDGKYPEVAQEAHALLRSTPHDVMIVAAYGLILPRSVLDIPRYGCINIHGSLLP 120

Query: 121 RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPIQEDDTTGSLHDKLAALG 180
           RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPI ++DTTGSLHDKLAALG
Sbjct: 121 RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPISDEDTTGSLHDKLAALG 180

Query: 181 GKMIVEALDKLERGELPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG 240
            KMIVEA++KLE+G LPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG
Sbjct: 181 AKMIVEAMEKLEQGTLPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG 240

Query: 241 ATGRFGDTVVKLWQARPVKVAQQGEPGQVLSADAQAGIVVACGEGALLLTELQKPGGKRL 300
           ATGRFGDTVVKLW+AR V VAQQGEPGQVLSADAQ GIVVACGEGALLLTELQKPGGKRL
Sbjct: 241 ATGRFGDTVVKLWKARAVTVAQQGEPGQVLSADAQGGIVVACGEGALLLTELQKPGGKRL 300

Query: 301 PAAQFLTGFPMEGGRL 316
           PAA+FL GFPMEGGRL
Sbjct: 301 PAAEFLKGFPMEGGRL 316


>gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 12/245 (4%)

Query: 15  ALEALYAAGHQITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVAQPVSLRLNGKYPDV 74
            L+ L A G Q++LV+T  D        +    V     +HG     P     + K P +
Sbjct: 15  CLKVLLARGVQVSLVVTHEDSATE---NIWFGSVAGVCREHGIACITPA----DPKSPQL 67

Query: 75  AQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRYGCINIHGSLLPRWRGAAPIHRAIEA 134
                A +Q+   D +    Y  +LP  VL   + G  N+HGSLLP++RG  PI+ A+  
Sbjct: 68  L----AQVQAAQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWAVLH 123

Query: 135 GDAETGITIMQMEEGLDTGPMMLIESLPIQEDDTTGSLHDKLAALGGKMIVEALDKLERG 194
           G+ ETG T+ +M    D G ++   S+PI  DDT   +  K+       +   L  +  G
Sbjct: 124 GETETGATLHEMTVKPDAGAIVAQTSVPILPDDTAHEVFGKVVVAAELTLWNVLPAMLSG 183

Query: 195 ELPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFN-PFPGATGRFGDTVVKLW 253
             P+ P      +Y      E+  +D+ ++A ++   +RA   P+PGA     D  + + 
Sbjct: 184 RTPSMPNDLSKGSYYGGRKPEDGRIDWRRTAREVHNLVRAVAPPYPGAFEEIADDKITVT 243

Query: 254 QARPV 258
           + R V
Sbjct: 244 RTRLV 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,096,391
Number of extensions: 49552
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)