BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4198.p
         (640 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313624|ref|YP_003777716.1| Ser protein kinase [Herbaspiril...  1321   0.0  

>gi|300313624|ref|YP_003777716.1| Ser protein kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 640

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/640 (99%), Positives = 639/640 (99%)

Query: 1   MDIYSSFASRFDKTREEELSLEEYLNLCKNDPAVYASAAERMLMAIGEPEKVDTREDPRL 60
           MDIYSSFASRFDKTREEELSLEEYLNLCKNDPAVYASAAERMLMAIGEPEKVDTREDPRL
Sbjct: 1   MDIYSSFASRFDKTREEELSLEEYLNLCKNDPAVYASAAERMLMAIGEPEKVDTREDPRL 60

Query: 61  SRIFANKVIKVYPAFKEFYGAEEVIEQVVSYFRHAAQGLEEKKQILYLLGPVGGGKSSIA 120
           SRIFANKVIKVYPAFKEFYGAEEVIEQVVSYFRHAAQGLEEKKQILYLLGPVGGGKSSIA
Sbjct: 61  SRIFANKVIKVYPAFKEFYGAEEVIEQVVSYFRHAAQGLEEKKQILYLLGPVGGGKSSIA 120

Query: 121 ERLKQLMEQVPFYSIKGSPVNESPLGLFDYDEDGPILEEQYGIPRRYLKPILSPWAVKRL 180
           ERLKQLMEQVPFYSIKGSPVNESPLGLFDYDEDGPILEEQYGIPRRYLKPILSPWAVKRL
Sbjct: 121 ERLKQLMEQVPFYSIKGSPVNESPLGLFDYDEDGPILEEQYGIPRRYLKPILSPWAVKRL 180

Query: 181 HEYNGDIRQFRVVKRYPSILRQIGISKTEPGDENNQDISTLVGKVDIRKLEQYSQDDADA 240
           HEYNGDIRQFRVVKRYPSILRQIGISKTEPGDENNQDISTLVGKVDIRKLEQYSQDDADA
Sbjct: 181 HEYNGDIRQFRVVKRYPSILRQIGISKTEPGDENNQDISTLVGKVDIRKLEQYSQDDADA 240

Query: 241 YSYSGGLCLSNQGLLEFVEMFKAPIKVLHPLLTATQEGNFKGTEGFGAIPFDGVILAHSN 300
           YSYSGGLCLSNQGLLEFVEMFKAPIKVLHPLLTATQEGNFKGTEGFGAIPFDGVILAHSN
Sbjct: 241 YSYSGGLCLSNQGLLEFVEMFKAPIKVLHPLLTATQEGNFKGTEGFGAIPFDGVILAHSN 300

Query: 301 ESEWKAFRNNKNNEALLDRIFIVKVPYCLRVSEEIKIYEKLIRSSSLGKATCAPGTLKMM 360
           ESEWKAFRNNKNNEALLDRIFIVKVPYCLRVSEEIKIYEKLIRSSSLGKATCAPGTLKMM
Sbjct: 301 ESEWKAFRNNKNNEALLDRIFIVKVPYCLRVSEEIKIYEKLIRSSSLGKATCAPGTLKMM 360

Query: 361 AQFSVLTRLKEPENSSLFSKMQVYDGENLKDTDPKAKSYQEYRDYAGVDEGMNGISTRFA 420
           AQFSVLTRLKEPENSSLFSKMQVYDGENLKDTDPKAKSYQEYRDYAGVDEGMNGISTRFA
Sbjct: 361 AQFSVLTRLKEPENSSLFSKMQVYDGENLKDTDPKAKSYQEYRDYAGVDEGMNGISTRFA 420

Query: 421 FKILSRVFNFDTTEVAANPVHLMYVLEQQIEREQFPQEVEQKYLSFVKDTLASRYAEFIG 480
           FKILSRVFNFDTTEVAANPVHLMYVLEQQIEREQFPQE EQKYLSFVKDTLASRYAEFIG
Sbjct: 421 FKILSRVFNFDTTEVAANPVHLMYVLEQQIEREQFPQETEQKYLSFVKDTLASRYAEFIG 480

Query: 481 KEIQTAYLESYSEYGQNVFDRYVTYADFWIQDQEYRDHDTGESFDRAALNAELEKIEKPA 540
           KEIQTAYLESYSEYGQNVFDRYVTYADFWIQDQEYRDHDTGESFDRAALNAELEKIEKPA
Sbjct: 481 KEIQTAYLESYSEYGQNVFDRYVTYADFWIQDQEYRDHDTGESFDRAALNAELEKIEKPA 540

Query: 541 GISNPKDFRNEIVNFVLRARVNNGGKNPLWTSYEKLRVVIEKKMFSNTEDLLPVISFNAK 600
           GISNPKDFRNEIVNFVLRARVNNGGKNPLWTSYEKLRVVIEKKMFSNTEDLLPVISFNAK
Sbjct: 541 GISNPKDFRNEIVNFVLRARVNNGGKNPLWTSYEKLRVVIEKKMFSNTEDLLPVISFNAK 600

Query: 601 GSTEEMQKHEDFVNRMVSKGYTPKQVRLLCEWYLRVRKSS 640
           GSTEEMQKHEDFVNRMVSKGYTPKQVRLLCEWYLRVRKSS
Sbjct: 601 GSTEEMQKHEDFVNRMVSKGYTPKQVRLLCEWYLRVRKSS 640


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,867,501
Number of extensions: 76992
Number of successful extensions: 241
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 549
Effective length of database: 1,188,985
Effective search space: 652752765
Effective search space used: 652752765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)