BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4193.p
         (566 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313620|ref|YP_003777712.1| inner-membrane transmembrane pr...  1018   0.0  

>gi|300313620|ref|YP_003777712.1| inner-membrane transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score = 1018 bits (2632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/544 (94%), Positives = 530/544 (97%), Gaps = 3/544 (0%)

Query: 24  MRHNGHQSMFFPSATSTQEQAAANPASPTASPTGSPVPQAGTPAPAPGAVPGAEVAA-AT 82
           MRHNGHQSMFFPSA  TQEQAAANPA+PTASPTGSPVPQAGTPAP  GAVPGA+VAA AT
Sbjct: 1   MRHNGHQSMFFPSANPTQEQAAANPAAPTASPTGSPVPQAGTPAP--GAVPGADVAATAT 58

Query: 83  KGETITITTDLVKASIDTVGGELKRLELLKEPDVVDPTKNVVLFDSEPGHMYLAESGLIG 142
           KGETI ITTDLVKASIDTVGGELKRLELLK+PDVVDPTKNVVLFDSEPGHMYLAESGLIG
Sbjct: 59  KGETIVITTDLVKASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIG 118

Query: 143 GPFPNHKTIFTAQPGPRTLDNGNEVQLVLVAEQGGVKLTKTYTFKRDSYLIDVKHTVTNT 202
           GPFPNHKTIFTAQ GPRTLDNGNE+QLVLVA+QGGVKLTKTYTFKRDSYLIDVKHTVTNT
Sbjct: 119 GPFPNHKTIFTAQAGPRTLDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVTNT 178

Query: 203 TGAPINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYSDAEHFEKLDFEKIANGKQQHVNK 262
           TGA INPSLYLQLVRDGNKPGGESHFYSTFTGPAVYS++EHFEKLDFEKIANGKQQHVNK
Sbjct: 179 TGAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHVNK 238

Query: 263 ADNGWIAMVQHYFVSAFIPPQKAERDIFSKKVGDNLYAIGSILPLGTVAPNASVTMDSQL 322
            DNGWIAMVQHYFVSAFIPPQ A+RD+FSKKVGDNLYA+GSILPLGTVAPNASVTMDSQL
Sbjct: 239 TDNGWIAMVQHYFVSAFIPPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDSQL 298

Query: 323 YSGPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNLVGNWGWTIILLTVLIKL 382
           YSGPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHN+VGNWGWTIILLTVLIKL
Sbjct: 299 YSGPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLIKL 358

Query: 383 VFFPLSAASYRSMAKMKAVSPKMQAIRERHKNDPQAMNREMMALYKTEKINPLGGCLPIV 442
           +FFPLSAASYRSMAKMKAVSPKMQAIRERHK DPQAMNREMM LYKTEKINPLGGCLPI 
Sbjct: 359 IFFPLSAASYRSMAKMKAVSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLPIA 418

Query: 443 IQIPVFISLYSVLLASVEMRGAPWLGWVHDLTAPDRLFGTLPYFNMPIGLLPIIMAASMF 502
           IQIPVFI+LYSVLLASVEMRGAPWLGWVHDLTAPDRLFGT+PYFNMPIGLLPIIMAASMF
Sbjct: 419 IQIPVFIALYSVLLASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMF 478

Query: 503 LQTKLNPTPPDPVQAKVMMFMPLVFSVMFFFFPSGLVLYWVTNNILSIAQQWVITRNIES 562
           LQTKLNPTPPDPVQAKVMMFMPLVFS MFFFFPSGLVLYWVTNNILSIAQQWVITRNIES
Sbjct: 479 LQTKLNPTPPDPVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQWVITRNIES 538

Query: 563 GKTK 566
           GKTK
Sbjct: 539 GKTK 542


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,574,936
Number of extensions: 63155
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,193,720
Effective search space: 568210720
Effective search space used: 568210720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)