BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4186.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313615|ref|YP_003777707.1| FAD dependent dehydrogenase [He...   746   0.0  

>gi|300313615|ref|YP_003777707.1| FAD dependent dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/399 (89%), Positives = 383/399 (95%)

Query: 1   MRPLRYAIIGGGINGLAVARQLLLDRPDVEVTVFEKEDAVARHQSSHNSGVVHAGLYYEP 60
           M+PLRYA+IGGGINGLAVARQLLLD PDV VTVFEKE+AVA+HQSSHNSGVVHAGLYYEP
Sbjct: 1   MKPLRYAVIGGGINGLAVARQLLLDDPDVRVTVFEKEEAVAQHQSSHNSGVVHAGLYYEP 60

Query: 61  GGLKAILCRRGVQLVQSYCQQNALPYDECGKVVVALTQEELPRLEAIYRKALANGVPDVE 120
           GGLKA LCRRGV+LV+ YC+QNALPYDECGKVVVAL +EELPRLEAIYRKALANGVPDVE
Sbjct: 61  GGLKATLCRRGVELVKRYCEQNALPYDECGKVVVALGEEELPRLEAIYRKALANGVPDVE 120

Query: 121 MIDAGRLREIEPNCVGLRALYSPRTAIVSYGRIAQRMAQEIEERGGTIRLNAAVRRIVER 180
           MIDA RLREIEPNCVGLRALYSPRTAIVSYG+IAQRMAQEIEERGGTIRLNA+VRR++ER
Sbjct: 121 MIDAARLREIEPNCVGLRALYSPRTAIVSYGQIAQRMAQEIEERGGTIRLNASVRRVIER 180

Query: 181 GEQVHIELQSGELHAQAFDAAIACSGLQSDRLAQHSGDSATPRIVPFFGQYYVIDEAFKT 240
           G+QVHIELQSGE+H +AFD+AIACSGLQSDRLAQ SGD+ATPRIVPFFGQYYVIDEA+K+
Sbjct: 181 GDQVHIELQSGEMHPEAFDSAIACSGLQSDRLAQQSGDAATPRIVPFFGQYYVIDEAYKS 240

Query: 241 HVKGLIYPVPDPRFPFLGVHFTKRIDGQMTIGPNAFISLGRENYLGDRFSLRDIADYLGY 300
           HVKGLIYPVPDPRFPFLGVHFTKRIDGQMTIGPNAFISLGRENY GDRFSLRDIADYL Y
Sbjct: 241 HVKGLIYPVPDPRFPFLGVHFTKRIDGQMTIGPNAFISLGRENYHGDRFSLRDIADYLSY 300

Query: 301 PGFWKFAGRNVPATLRELKTVLSAKVFVREAARYVPSLAEVSVTPAVRGIRAQAMERDGR 360
           PGFWKFA RNVPATLRELKTV+S ++FVREAARYVP+LAEV VTPAVRGIRAQAME +GR
Sbjct: 301 PGFWKFASRNVPATLRELKTVVSERIFVREAARYVPALAEVGVTPAVRGIRAQAMESNGR 360

Query: 361 LVDDFVIRQSRRVTHIRNAPSPGATSSLAIGEHIVRQLV 399
           LVDDFVIRQS RVTHIRNAPSPGATSSLAIGEHIVR L+
Sbjct: 361 LVDDFVIRQSSRVTHIRNAPSPGATSSLAIGEHIVRNLI 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,306,196
Number of extensions: 56641
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)