BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4184.p (251 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 67 2e-12 gi|300312613|ref|YP_003776705.1| transcription regulator protein... 59 3e-10 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 57 1e-09 gi|300309587|ref|YP_003773679.1| GntR family transcription regul... 57 2e-09 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Query: 8 YRLAQAQIKRFIEERGLTLGDALPPEGMLAEELGMSRPSLREAVKSLESLGILESRHGEG 67 YR Q+++ I E +G LP E LA +LG+SRPSLREA+ +LE G +E R G G Sbjct: 12 YRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEVRMGSG 71 Query: 68 IYV-----KGFSFDTILDNLPYAFAADGKQLRELLQVRAAIETGAAPAILQHMSAAQLKT 122 IYV + D + P EL++ R IE A A QH S Q+ Sbjct: 72 IYVCPPVQRERRIDLSSEEGPL----------ELIRAREMIEGEVAYAAAQHGSKQQIAA 121 Query: 123 LRQQADHMLVLARSGEEVGEEDRQFQATLYGCLDNAFLSTLTDLLW 168 + + M+ A++G + E DR F L N+ L L L+ Sbjct: 122 VEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLF 167 >gi|300312613|ref|YP_003776705.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 7/193 (3%) Query: 30 LPPEGMLAEELGMSRPSLREAVKSLESLGILESRHGEGIYVKGFSFDTILDNLPYAFAAD 89 LPPE LA LG+ RP++REA++ L LG+L R GEG +V +L+ L + Sbjct: 34 LPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQGEGTFVSSLETRELLEPLEMIIDLN 93 Query: 90 GKQLRELLQVRAAIETGAAPAILQHMSAAQLKTLRQQADHMLVLARSGEEVGEEDRQFQA 149 L L R IETG A H+ A+L L + + L D +F Sbjct: 94 PGTLESLFDARLIIETGVAALAATHIEDAELDRLARNVEDEARLLSDPAAFAAADVEFHE 153 Query: 150 TLYGCLDNAFLSTLTDLLWRMFQRMGEARLALDGRLA---EATARDRIQLAKMIEAKDLE 206 + +N FL ++ L+ +G+ ++ R+ E + +D Q+ ++A+D + Sbjct: 154 AIIEACNNPFLQSIAGSLY----MLGKKSRSITSRIPATLERSLQDHRQILDALKARDPQ 209 Query: 207 GLLQACEKHFQRL 219 +A H R+ Sbjct: 210 KASEAMRHHLMRV 222 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 15/190 (7%) Query: 13 AQIKRFIEERGLTLGDALPPEGMLAEELGMSRPSLREAVKSLESLGILESRHGEGIYV-- 70 A + I LT GD LP E + + G+SR +REA+ L++ G++E+RHG G +V Sbjct: 26 AALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRHGIGTFVLE 85 Query: 71 --KGFSFDTILDNLPYAFAADGKQLRELLQVRAAIETGAAPAILQHMSAAQLKTLRQQAD 128 KG + N+ A + L LL++R ++ET A + QL+ +R+ D Sbjct: 86 AKKGGNI-----NIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEIREALD 140 Query: 129 HMLVLARSGEEVGEEDRQFQATLYGCLDN-AFLSTLTDLLWRMF--QRMGEARLALDGRL 185 + G + D +F + N F+ ++ L + +R+ A LA D Sbjct: 141 LFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAELAHD--- 197 Query: 186 AEATARDRIQ 195 +A+ DR+Q Sbjct: 198 QQASYLDRVQ 207 >gi|300309587|ref|YP_003773679.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 14 QIKRFIEERGLTLGDALPPEGMLAEELGMSRPSLREAVKSLESLGILESRHGEGIYVKGF 73 +++ + + G T LPPE LAE+LG+SRPS+REA+ +LE G +E R G G+Y+ Sbjct: 29 RLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEIRMGSGVYLTQA 88 Query: 74 SFDTILDNLPYAFAADGKQLRELLQVRAAIETGAAPAILQHMSAAQ-LKTLRQQADHMLV 132 + + P G L +++ RA E GA A++ ++ + +K LR D M Sbjct: 89 APPGQQEE-PAPDKEMGNSLSDIMGARAIFE-GAIVALVAPLAKPRDIKALRAIYDTMER 146 Query: 133 LARSGEEVGEEDRQFQATLYGCLDNAFL 160 ++G+ DR F + N L Sbjct: 147 ECQAGQSPAATDRDFHIRIARMTGNDVL 174 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 756,571 Number of extensions: 29991 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 7 Length of query: 251 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,226,865 Effective search space: 206113320 Effective search space used: 206113320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)