BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4182.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260...   246   1e-66

>gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  246 bits (627), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/248 (59%), Positives = 175/248 (70%), Gaps = 17/248 (6%)

Query: 3   MLRPS-----PQSIHHSLWRASQLAQGGARCIDTGFAELSQELPGRGWPTGALIDFLLQQ 57
           ML PS     P++IH +LW ASQLA+G  R + +GF  L  ELPGRGWPTG LI+ LL Q
Sbjct: 40  MLSPSSPARTPETIHPALWLASQLARGNGRGVSSGFEALDAELPGRGWPTGVLIELLLPQ 99

Query: 58  PGVGELRLLGPAL---QSLAPR----RIALVQTPHAPHLIGWQQIGVEAARLLAVRTTTS 110
            GVGELRLL P L   Q L P     RIAL+Q PHA +  GW  +GV A RLL ++  T 
Sbjct: 100 DGVGELRLLRPLLAQPQRLRPGAPSGRIALLQAPHAINAPGWAAMGVPATRLLQLQADTP 159

Query: 111 ADAAWAAEQILKSDSCAALLLWQRHLRP---ESVRRLHLAAQSGQTLFVMLRPGSCAQDA 167
            DA WAAEQ+L++DSC ALL+WQ  LR    + +RRLH+AAQ+GQTLF MLRP +CA++A
Sbjct: 160 VDACWAAEQVLRADSCQALLMWQARLRKGDHDLLRRLHVAAQAGQTLFFMLRPLACAREA 219

Query: 168 SPAPLRLALTAAPGGIAIDFIKRRGPLRAAPLFVSL-PSLNLLPH-APVDRRTPAFAAAG 225
           SPAPLRL L  APGG+ I F+KRRGPLR   LF+ L PS NL  H +PVDRRTPA AAAG
Sbjct: 220 SPAPLRLTLRPAPGGLDIGFLKRRGPLREHSLFLPLTPSPNLQRHVSPVDRRTPATAAAG 279

Query: 226 GVLSELAG 233
            + SELAG
Sbjct: 280 SLPSELAG 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 763,338
Number of extensions: 30309
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)