BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4177.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313612|ref|YP_003777704.1| flavoprotein oxidoreductase [He...   736   0.0  

>gi|300313612|ref|YP_003777704.1| flavoprotein oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 432

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/431 (85%), Positives = 394/431 (91%)

Query: 1   MQTLPTLAPGSSRVAVIGAGPAGLMAAEVLAAHGVAVDVYDAMPSAGRKFLLAGRGGMNI 60
           MQT    A    RVAVIGAGPAGLMAAEVLAAHG+AVDVYDAMPSAGRKFLLAG+GGMNI
Sbjct: 1   MQTPTPSATDGKRVAVIGAGPAGLMAAEVLAAHGLAVDVYDAMPSAGRKFLLAGKGGMNI 60

Query: 61  THSEAQPDFLPRYGKRREQVAPFVRRFDGEQLRAWIHELGIETFVGSSGRVFPREMKAAP 120
           THSE QPDFLPRYGKRREQVAPFVRRFD ++LRAWIH+LGIETFVGSSGRVFPREMKAAP
Sbjct: 61  THSEPQPDFLPRYGKRREQVAPFVRRFDADRLRAWIHDLGIETFVGSSGRVFPREMKAAP 120

Query: 121 LLRAWLHRLRQAGVQFHMRHRWLGWQEDGALRLAHPEGEIAVRPDAVVLALGGGSWPRLG 180
           LLRAWLHRLR+AGV+ HMRHRWLGWQ+DG LRLAHP+GE +VR DAVVLALGG SWPRLG
Sbjct: 121 LLRAWLHRLREAGVRLHMRHRWLGWQQDGTLRLAHPDGETSVRADAVVLALGGASWPRLG 180

Query: 181 SDGSWVPLLQARQVEVAPLLPSNCGFELDWSAHFRERFAGEPVKPVVASTAHASGGVQNR 240
           SDGSWVPLLQARQVEVAPLLP+NCGFELDWS HFRERFAG PVKPVVAS A  SGG+QNR
Sbjct: 181 SDGSWVPLLQARQVEVAPLLPANCGFELDWSEHFRERFAGAPVKPVVASVALPSGGMQNR 240

Query: 241 RGEFIVTAEGIEGSLVYAMSAALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARS 300
           RGEFI+TA+GIEG LVYA+S+ALR+TIA+EGSARLYLDLLPDW LEKV AEL+HPRGARS
Sbjct: 241 RGEFIITAQGIEGGLVYALSSALRETIASEGSARLYLDLLPDWTLEKVSAELSHPRGARS 300

Query: 301 LSSHLQSRLHLKGVKAGLLRELLSKEDFADMGKLARAIKALPLTVWRTRPLAEAISSAGG 360
           LSSHLQSRLHLKGVKAGLLRELL K+ FADM KLARAIKALPLTV R RP+AEAISSAGG
Sbjct: 301 LSSHLQSRLHLKGVKAGLLRELLDKDTFADMDKLARAIKALPLTVLRPRPIAEAISSAGG 360

Query: 361 VSFEALDDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGAGVLHWLISADRA 420
           VSFEALDDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATG AAG GV+ WL +  + 
Sbjct: 361 VSFEALDDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGHAAGHGVVQWLKAEGQQ 420

Query: 421 AGLSASHEEQH 431
           AGL+AS EE+ 
Sbjct: 421 AGLNASQEERQ 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,556,511
Number of extensions: 72488
Number of successful extensions: 326
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)