BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4160.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313590|ref|YP_003777682.1| transmembrane protein [Herbaspi...   604   e-174

>gi|300313590|ref|YP_003777682.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  604 bits (1557), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 314/355 (88%), Positives = 333/355 (93%)

Query: 20  VASSFARVSLLVYTLLIVYASWYPFSGWRDIGIKPFDYLGARLPYYWTGFDVWTNVAGYA 79
             S+FARVSLLVY LLIVYASWYPFSGWRD+GIKPFDYL ARLPYYWTGFDVWTNVAGYA
Sbjct: 21  TGSAFARVSLLVYALLIVYASWYPFSGWRDLGIKPFDYLWARLPYYWTGFDVWTNVAGYA 80

Query: 80  PLGLLLVLSLYPLLRPWWAVWPAALAGVLLSACMEAVQTYLPTRVPSNLDLLTNSIGVTL 139
           PLGLLLVL+++P +RPWWAV PA LAGVLLSACMEA QTYLPTRVPSNLDLLTN++GVTL
Sbjct: 81  PLGLLLVLAMHPHIRPWWAVLPATLAGVLLSACMEAGQTYLPTRVPSNLDLLTNAVGVTL 140

Query: 140 GALLGAACSRYFLQESRFLLLRRRWFSSQASRGLVVAGLWPLALIYPQNHLFGLGHLVPP 199
           GALLGAACSR FL ESRFLL R+RWF ++ASRGL VAGLWPLALIYPQNHLFGLG+LVPP
Sbjct: 141 GALLGAACSRTFLHESRFLLARQRWFPAEASRGLAVAGLWPLALIYPQNHLFGLGNLVPP 200

Query: 200 VSAFFSDLLDTPIDLATTWLNSAQLSAEQYWLADVIVTACGLTGAALLMLLLLGRQAPRR 259
           +S FFSDLLDTPIDLATTWLN+AQLSAEQYWLADVIVTACGLTGAALL+L LL RQAPRR
Sbjct: 201 LSGFFSDLLDTPIDLATTWLNNAQLSAEQYWLADVIVTACGLTGAALLVLQLLRRQAPRR 260

Query: 260 RLVTLYLLGCIAAKSLACALFFAPQNAFVWISPSAVGGIMLGTMMIAGLTWAPPAAQRRV 319
           RLV LYLL CIAAKSLACALFFAPQNAFVWISPSAVGGIMLGTMMIAGL+WAPP AQRRV
Sbjct: 261 RLVALYLLACIAAKSLACALFFAPQNAFVWISPSAVGGIMLGTMMIAGLSWAPPTAQRRV 320

Query: 320 AALALILALVVTNAVPANPYYLSTLETWVQGKFLNFDGAAQFLSVLWPFLAIWFL 374
           A LAL L+LVVTNAVPANPYYLSTLETWVQGKFLNFDGAAQFLSV+WPFLA+W L
Sbjct: 321 AGLALFLSLVVTNAVPANPYYLSTLETWVQGKFLNFDGAAQFLSVIWPFLALWVL 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,003,307
Number of extensions: 33373
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)