BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4157.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313587|ref|YP_003777679.1| signal peptide protein [Herbasp...   378   e-106

>gi|300313587|ref|YP_003777679.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score =  378 bits (971), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/255 (78%), Positives = 215/255 (84%), Gaps = 8/255 (3%)

Query: 13  GNVVLFGLTRGYFGASATERREPQRLAQQLHPELLSVLPANSEKLASQLRAQPSTAQVAS 72
           GNV+LFGL RGYFGA+ATERREPQRLA+QLHPELLSVLPANSEKLASQ R+Q   A  ++
Sbjct: 13  GNVILFGLPRGYFGANATERREPQRLAEQLHPELLSVLPANSEKLASQTRSQAPAAAPSA 72

Query: 73  ADATATAPAAAATLTPATSTTSTTATQPAPTAATQTVAVTPSCTEVGNFTAADARRFSEQ 132
           + A       AA    A   T   A Q A        AVTPSCTEVGNFT ADA+RFSEQ
Sbjct: 73  SAAAPAGADPAAAANAAAPATQPPAAQVA--------AVTPSCTEVGNFTVADAKRFSEQ 124

Query: 133 LASLNLGDKVVQKLTQDVTSHMVYIAPEGGREGADRRVAELRRLGIGDFYVIPDSFPNPA 192
           LASLNLGD+V QKLTQDVTSHMVYI P+ GREGA+RR+AELRRLGIGDFYV+PDSFPNPA
Sbjct: 125 LASLNLGDRVAQKLTQDVTSHMVYIPPQDGREGAERRIAELRRLGIGDFYVLPDSFPNPA 184

Query: 193 LRYGVSLGIFRTEEAAKAYVGQLISRGVRSARIIARRSGAGKQVFQLRDLTPEARTALEN 252
           LR G+SLGIFRTEEAAKAYVGQLISRGVRSARIIARRSGAGKQVFQLRDL+PEARTAL+N
Sbjct: 185 LRSGISLGIFRTEEAAKAYVGQLISRGVRSARIIARRSGAGKQVFQLRDLSPEARTALDN 244

Query: 253 IKSAFPDQEIRACSA 267
           IKSAFPDQEIRACSA
Sbjct: 245 IKSAFPDQEIRACSA 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 560,774
Number of extensions: 18497
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)