BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4155.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300...   434   e-123
gi|300313747|ref|YP_003777839.1| hypothetical protein Hsero_4465...    86   3e-18

>gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300
           [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  434 bits (1115), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/306 (73%), Positives = 261/306 (85%), Gaps = 3/306 (0%)

Query: 1   MQRLIIVSLTWLSCFNFLAPARAATTADTVQPAPPRGALYQVSDGRHTLLLFGTIHVGAP 60
           MQRLIIVSLTWLSC N+L+PA+AA   +T   APPRGALY+VSDGRHTLLLFGTIHVGAP
Sbjct: 1   MQRLIIVSLTWLSCLNWLSPAQAA---ETTTEAPPRGALYEVSDGRHTLLLFGTIHVGAP 57

Query: 61  DFYPLEPRLTRALAAAPVLALELDPANTGAMQSAVQRHGLYPAGEHLLDQLDAPLRERTE 120
           DFYPLEPRL +ALAAAPVLALELDP N  AMQ A QRHGLYP G+HLLDQL  PLR+RT 
Sbjct: 58  DFYPLEPRLRQALAAAPVLALELDPQNAAAMQEAAQRHGLYPPGQHLLDQLAPPLRQRTM 117

Query: 121 SALQGLGMVPASVQQLRPWMLAMVLSVQQYVRHGYRTDLAVDSHLAATVRAHGGKVVELE 180
           + LQ LG+    VQ LRPWMLA+ L+VQ+Y RHGY++ LAVDSHLAA+VRAHGG+++ELE
Sbjct: 118 ATLQRLGLPEQGVQNLRPWMLALALTVQEYARHGYQSALAVDSHLAASVRAHGGQILELE 177

Query: 181 SAERQMAIFSKLGQAQQIQFLADTLQELDDANLTRKLDFLVDAWRHADSAGFANALKELQ 240
           SAERQM +FS+L  AQQ QFL DTL+EL D++L R++D LVDAWRHADSAG A+AL+ELQ
Sbjct: 178 SAERQMRLFSQLSDAQQAQFLDDTLKELQDSHLNRRIDTLVDAWRHADSAGLASALRELQ 237

Query: 241 EDGSFSSHFTVQALLRERNPGLAAGIAELLQRQDQAVAAIGILHLVGPDSVPVLLGKRGL 300
           ED SF+S FT++ LLR+RNPGLA GIA LL+RQD+AVA IGILHL GPDSVP LL K+GL
Sbjct: 238 EDDSFTSRFTLKNLLRDRNPGLATGIAALLRRQDKAVAGIGILHLTGPDSVPALLAKQGL 297

Query: 301 QVKQLY 306
           QV+QLY
Sbjct: 298 QVRQLY 303


>gi|300313747|ref|YP_003777839.1| hypothetical protein Hsero_4465
           [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 21/276 (7%)

Query: 34  PPRGALYQVSDGRHTLLLFGTIHVGAPDFYPLEPRLTRALAAAPVLALELDPANTGAMQS 93
           P RG L+++S   H   L+GTIH+   ++    P + +AL +A  + +E+D    G   +
Sbjct: 50  PDRGPLWEISKDGHLSYLYGTIHLARLEWDFPGPTILKALRSARTVVVEMDITRPGMAAT 109

Query: 94  AVQRHGLYPAGEHLLDQLDAPLRE----RTESALQGLGMVPASVQQLRPWMLAMVLSVQQ 149
                 L P  +   D + +PL +    RT+  L+     P + +          L++  
Sbjct: 110 M-----LAPMPQQAAD-VSSPLYQSLLARTDQQLRKACADPENFKGASLASKMASLTLLS 163

Query: 150 YVRHGYRTDLAVDSHLAATVRAHGGKVVELESAERQMAIFSKLGQAQQIQFLADTLQELD 209
             R G   D A+D+ L    R     ++ELE    Q  + S+     Q+  L   L +++
Sbjct: 164 ARRRGLYADFAIDAALIGFARYTRKDIIELEQPSDQRRVISQ----TQLASLERNLDDVE 219

Query: 210 DANLTRKLDFLVDAWRHADSAGFANALKELQEDGSFSSHFTVQALLRERNPGLAAGIAEL 269
                  L  L  AW   D  G A   K+LQ  G        Q    +RN   AAGIA+ 
Sbjct: 220 SGKTEDDLSALALAWERGDMGGIAELCKQLQCQGE-------QQYYEQRNKVFAAGIAKA 272

Query: 270 LQRQDQAVAAIGILHLVGPDSVPVLLGKRGLQVKQL 305
           +     A   +G LH++GPDSV   L   G +V+Q+
Sbjct: 273 MAGPGPAFIGVGFLHMLGPDSVIDQLRAMGFEVRQV 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 914,898
Number of extensions: 35674
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)