BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4154.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313584|ref|YP_003777676.1| HAD superfamily hydrolase [Herb...   453   e-129

>gi|300313584|ref|YP_003777676.1| HAD superfamily hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  453 bits (1166), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/245 (90%), Positives = 234/245 (95%)

Query: 11  MAPNTTPLWLFDLDNTLHNASHAIFPAINTNMNRIIKRVLDHDGQPSDEAAVNYLRRHYW 70
           MA NTTPLWLFDLDNTLHNASHAIFPAIN NMNRII+RVL+ DG PSDEAAVN++RRHYW
Sbjct: 1   MASNTTPLWLFDLDNTLHNASHAIFPAINANMNRIIQRVLEKDGLPSDEAAVNHMRRHYW 60

Query: 71  KLYGATLLGLVRHHGLEVDEFLHEAHLFDDLPGMVRAERGIGRWLSQLPGQKILLTNAPR 130
           KLYGATLLGLVRHHG+ VDEFLHEAHLFDDL GMVRAERGIGRWL++LPGQKILLTNAPR
Sbjct: 61  KLYGATLLGLVRHHGVGVDEFLHEAHLFDDLTGMVRAERGIGRWLARLPGQKILLTNAPR 120

Query: 131 RYSRELVRHLGLQRHFSHHISIESMHVHRQLRPKPSRLMLRKLLARHKVAPRRCILVEDT 190
           RYSRELVRHLGL RHFSHHI+IESMHVHRQLRPKPSRLMLRKLLARHK  PRRCILVEDT
Sbjct: 121 RYSRELVRHLGLHRHFSHHIAIESMHVHRQLRPKPSRLMLRKLLARHKATPRRCILVEDT 180

Query: 191 VDNLRSARELGVRTAWVTQYLRGSQALLGPIGGQRVLSRLPAYVDVKVRSVRQLPRRLAA 250
           VDNL++ARELGVRTAWVTQYLRGSQALLG IGGQRVLSR PA+VDVKVRSVRQLPRRLAA
Sbjct: 181 VDNLKTARELGVRTAWVTQYLRGSQALLGHIGGQRVLSRRPAFVDVKVRSVRQLPRRLAA 240

Query: 251 LGALR 255
           LGA+R
Sbjct: 241 LGAVR 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 835,028
Number of extensions: 35387
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)