BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4151.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313581|ref|YP_003777673.1| hypothetical protein Hsero_4296...   419   e-118

>gi|300313581|ref|YP_003777673.1| hypothetical protein Hsero_4296
           [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score =  419 bits (1076), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/222 (91%), Positives = 211/222 (95%)

Query: 1   MTTELDSSLIADYLLDHPHFFEEHAELLSTVKLTSPVMGRAVSLQERQMEILREKIRVQE 60
           MTTELDS LIA+YLL+HPHFFEEHAELLSTVKLTSPVMGRAVSLQERQMEILREKIRVQE
Sbjct: 1   MTTELDSDLIAEYLLEHPHFFEEHAELLSTVKLTSPVMGRAVSLQERQMEILREKIRVQE 60

Query: 61  LRMAELMRIAQENDEITNKFQAWSRALLLTRDAADLPRVLVTQLQEIFHVPQVTVRLWNL 120
           LRMAELMRIAQENDEITNKFQAWSRALLLTRDA DLP VLV QLQ+IFHVPQVTVRLWNL
Sbjct: 61  LRMAELMRIAQENDEITNKFQAWSRALLLTRDAEDLPAVLVKQLQDIFHVPQVTVRLWNL 120

Query: 121 TDTHMDNWATQEVSEDARIFANGLSTPFCGPNKEFEAASWLDDAASVKSVAMLPLRVGAA 180
              H DNWA QEV++DARIFANGLS PFCGPNK+FEAA+WLDDAA+VKSVAMLPLRVGAA
Sbjct: 121 GAAHADNWAVQEVTDDARIFANGLSAPFCGPNKDFEAATWLDDAATVKSVAMLPLRVGAA 180

Query: 181 PEAFGLLVLGSPDPNRFTIDMGTDFLTRIGETGSAALACLLR 222
           PEAFGLLVLGSPDPNRFT DMGTDFLTRIGETGSAALACLLR
Sbjct: 181 PEAFGLLVLGSPDPNRFTSDMGTDFLTRIGETGSAALACLLR 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 626,789
Number of extensions: 22378
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)