BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4149.p (534 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294... 757 0.0 gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot... 472 e-134 >gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294 [Herbaspirillum seropedicae SmR1] Length = 532 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/521 (81%), Positives = 454/521 (87%), Gaps = 3/521 (0%) Query: 1 MATREDLAIIRAARAGQAQAQLTLGKRYLFGGNGLPQSAGTALHWLERAARQGLADAWML 60 MA REDLAIIRAARAGQA AQLTLGKRYLFGGNGLPQS TA HWLERAARQ LADAWML Sbjct: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 Query: 61 IAQHIPYEVLTSLAQPHEAAQWYERAFDAGLTPAGLVYARLVLEHPAGAAVASADMKEKA 120 IA+HIPYEV+ +L +P EAAQWYERAF+ G+T AGL +ARLVLE A A++K +A Sbjct: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGMTKAGLAFARLVLE---SAGEPGAELKARA 117 Query: 121 IRALEAVAREGDPDAQWLLARQAERMFKHAPVASASEPAPARVVAADALQQWTQKAADAG 180 IR L+ VAREGDPDAQWLLARQ + + A A+ + PAPA + + LQQWTQKAADAG Sbjct: 118 IRVLQVVAREGDPDAQWLLARQGSQPAEPAASAAVAAPAPAPDLPPEDLQQWTQKAADAG 177 Query: 181 IEQAQHALADRAWQQSDFAAFGQRAQPLADAMLRQHEALVAQLNAPSEALAAALGAQNIQ 240 IEQAQHALAD AWQQ+D F QRAQPLAD +LRQ+EALVAQLN P+EALA ALG QNI Sbjct: 178 IEQAQHALADAAWQQADLIQFRQRAQPLADKLLRQYEALVAQLNGPAEALATALGPQNIV 237 Query: 241 LLRRLAEVQLADKRPDLLYAQQLLELAALACDRDAQLALGLLYGRVDASGTRRFAGQGSA 300 LLRRLA+V L +KR DL AQQLLELAALACDRDAQLALGLLYGRVD G R F G GSA Sbjct: 238 LLRRLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSA 297 Query: 301 NYKKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVEAQLEC 360 NYKKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHV AQLEC Sbjct: 298 NYKKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLEC 357 Query: 361 GVGAWRNRRDDPANDVRALYWLQKAATQGASQAQALLDKVADRPQAASWAVQARAQLSRE 420 G+GAWRNRRD+ NDVRALYWLQKAA+QG QAQALLDKVADRPQAA+WAV ARAQL+RE Sbjct: 358 GIGAWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTRE 417 Query: 421 QINAHPFLAARIELAALFGLTRPEALLIDLKQADCGHCLVVDIRSQYARSKRRLIMVETG 480 Q+NAHPFLAARIELA LFGLTRPEALLIDLKQAD GHCL+VDIRSQYARSKRRLIMVE G Sbjct: 418 QVNAHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENG 477 Query: 481 EQRGALNRIGRLFEDMDCGPSGPEGNYRQRLYRLKTVLPQS 521 EQRGALNRIGRLFED+DCGPSGPEGNYRQRLYRLKTVLPQS Sbjct: 478 EQRGALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLPQS 518 >gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 472 bits (1215), Expect = e-134, Method: Compositional matrix adjust. Identities = 272/521 (52%), Positives = 352/521 (67%), Gaps = 13/521 (2%) Query: 1 MATREDLAIIRAARAGQAQAQLTLGKRYLFGGNGLPQSAGTALHWLERAARQGLADAWML 60 MATRE+LA+I+AARAG+++AQL LG+RYL GG+GLP+S GTA +WL RAA+QG+ DAWM+ Sbjct: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 Query: 61 IAQHIPYEVLTSLAQPHEAAQWYERAFDAGLTPAGLVYARLVLEHPAGAAVASADMKEKA 120 I ++I YE + L+ P EAA WYE+AF+AG+ AGL++ARLVL++ + ++ +A Sbjct: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDN---TSEFDSNTHARA 117 Query: 121 IRALEAVAREGDPDAQWLLARQAERMFK-HAPVASASEPAPARVVAADALQQWTQKAADA 179 I AL +A D +AQWLLA+Q +R + P A+A+ PA D L +AA A Sbjct: 118 IAALSLLASRDDHEAQWLLAQQMQRHGQPMLPGAAAASPA-----YEDKL---MLEAARA 169 Query: 180 GIEQAQHALADRAWQQSDFAAFGQRAQPLADAMLRQHEALVAQLNAPSEALAAA-LGAQN 238 GIE+AQ+A+ D+AWQQ D A+F + AQ + +L +H VAQL + A L + Sbjct: 170 GIEEAQYAVLDKAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEE 229 Query: 239 IQLLRRLAEVQLADKRPDLLYAQQLLELAALACDRDAQLALGLLYGRVDASGTRRFAGQG 298 LL R + +L PD Q L ELAA+ + A L LGLL ++D G R F G Sbjct: 230 ATLLLRYGQWRLRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHG 289 Query: 299 SANYKKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVEAQL 358 AN+KKA+ WL AGE G+A W+ L+RIY + +SQRNL QHYLE+AA+ G VEAQ Sbjct: 290 LANFKKALHWLERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQC 349 Query: 359 ECGVGAWRNRRDDPANDVRALYWLQKAATQGASQAQALLDKVADRPQAASWAVQARAQLS 418 E WR+RRDDP NDV+ALYW Q+AA QG AQA LD A +P A WA+QA+A L+ Sbjct: 350 ELAQVCWRHRRDDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLT 409 Query: 419 REQINAHPFLAARIELAALFGLTRPEALLIDLKQADCGHCLVVDIRSQYARSKRRLIMVE 478 + N+ PFL+ARIELAA FGLT+PEALLID+K AD GHCLVVDI + +ARSKRRLI V+ Sbjct: 410 DKLRNSSPFLSARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQ 469 Query: 479 TGEQRGALNRIGRLFEDMDCGPSGPEGNYRQRLYRLKTVLP 519 T QR LNR+ RLF D+DCG G EGNYRQR YRL+T P Sbjct: 470 TDAQRATLNRVSRLFGDVDCGFDGLEGNYRQRQYRLRTTFP 510 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,552,094 Number of extensions: 62326 Number of successful extensions: 359 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 2 Length of query: 534 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 444 Effective length of database: 1,193,720 Effective search space: 530011680 Effective search space used: 530011680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)