BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4147.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313577|ref|YP_003777669.1| lipid A biosynthesis lauroyl ac...   448   e-127
gi|300313576|ref|YP_003777668.1| lauroyl/myristoyl acyltransfera...    89   4e-19

>gi|300313577|ref|YP_003777669.1| lipid A biosynthesis lauroyl
           acyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  448 bits (1153), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/289 (79%), Positives = 257/289 (88%)

Query: 1   MRALIGLMWLLHWLPLPILGRLGEALGWLLYMYMRPRRRITLINLRLCFPEKTEQERRRI 60
           MR L+ +MWLLHWLPLPILGRLGE +G LLY+YMRPRR I L NLRLCFPEKTE+ER  I
Sbjct: 1   MRLLLAIMWLLHWLPLPILGRLGEGIGSLLYLYMRPRRHIALTNLRLCFPEKTEEERVSI 60

Query: 61  ACRHFQAYARSALERGILWWAPESRLKRLIQVEPGIPFETLDKGPTILLCPHFVCLEIPG 120
           A  HF+ +ARSALERGILWWAP SRL+RLIQVEPG+P +T  KGPTILL PHFVCLEIPG
Sbjct: 61  AREHFRLFARSALERGILWWAPISRLRRLIQVEPGMPLDTFAKGPTILLAPHFVCLEIPG 120

Query: 121 IALVLNSDYSVCTIYARQQNEVVDQALLKGRSRFRPVTLLAREKGVKPIIRAMREGLPFI 180
             L + S+YS CTIY +Q+N+V+D+ALLKGR RFRP TLLARE+GVKPIIRAMR+GLPF+
Sbjct: 121 ATLGVFSEYSACTIYTKQRNDVIDRALLKGRLRFRPATLLAREQGVKPIIRAMRKGLPFL 180

Query: 181 MLPDMDFGTRDAEFVPFFGVPASTLTATARIAAATGASVVPVITTFLPDYRGWKTTFYPA 240
           MLPDMDFG RDAEFVPFFGVPA+TLTATARIAAATGA+VVPV+ TFLPDY+GWK T+YPA
Sbjct: 181 MLPDMDFGIRDAEFVPFFGVPAATLTATARIAAATGAAVVPVVCTFLPDYKGWKATYYPA 240

Query: 241 WDDYPGQDIVAATRRMNAFIEERVLEAPAEYFWAHKRFKNRPPGQPDVY 289
           W DYPG+DIVAATRRMNAFIE+RV E PAEYFWAHKRFK RPPG+PDVY
Sbjct: 241 WTDYPGEDIVAATRRMNAFIEDRVREHPAEYFWAHKRFKTRPPGEPDVY 289


>gi|300313576|ref|YP_003777668.1| lauroyl/myristoyl acyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 28/298 (9%)

Query: 4   LIGLMWLLHWLPLPILGRLGEALGWLLYMYMRPRRRITLINLRLCFPEKTEQERRRIACR 63
           L+ L  LL +LPLP L  +G  +GWL+++     RR    N+ L     +         R
Sbjct: 2   LVSLFRLLSFLPLPALHAIGVVVGWLVFLLSPSYRRRLRSNITLAGHGAS-------LYR 54

Query: 64  HFQAYARSALERGILWWAPESRLKRLIQVEPGIPFETLD-----KGPTILLCPHFVCLEI 118
                 +   E   +W A   R+ R  ++   + +E +      K   I L PH  C EI
Sbjct: 55  AVGEAGKGMFELPFIWCASPRRVLRTARI---VNWELVQQALATKSGVIFLTPHLGCFEI 111

Query: 119 PGIALVLNSDYSVCTIYARQQNEVVDQALLKGRSRFRPVTLLAREKGVKPIIRAMREGLP 178
              A V+    S+  +Y   +   +   +   R+R       A   GV+ +++A++ G  
Sbjct: 112 A--AQVVARHTSLSVLYRPPRKAALKPLIEGARARANLHLAPANLAGVRILLKALKTGQA 169

Query: 179 FIMLPDMDFGTRDAEFVPFFGVPASTLTATARIAAATGASVVPVITTFLPDYRGWKTTFY 238
             +LPD      +  +  FFG PA T+T +A++   +GA ++      L   RG+   F 
Sbjct: 170 IGLLPDQVPQNGEGVWAGFFGKPAYTMTLSAKLQQMSGAPLLLTYAQRLSWGRGYAIHFV 229

Query: 239 P---AWDDYPGQDIVAATRRMNAFIEERVLEAPAEYFWAHKRFKNRPPGQPDVYRKGQ 293
           P   A D  P Q   A    +NA +E  +   PA+Y W++ R+K  PPG   V R G+
Sbjct: 230 PFEGALDGTPEQQAQA----INAAMEALIARCPAQYIWSYNRYKT-PPG---VSRPGE 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 954,094
Number of extensions: 37422
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)