BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4140.p
         (665 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313570|ref|YP_003777662.1| soluble lytic murein transglyco...  1220   0.0  

>gi|300313570|ref|YP_003777662.1| soluble lytic murein
           transglycosylase precursor transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 666

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/666 (93%), Positives = 642/666 (96%), Gaps = 1/666 (0%)

Query: 1   MSMRPKNHPFNQRLRALAASLALPLALAGAAMLTMAPAAHAQKRLAPDAAPDDIFLALRQ 60
           MSMRPKNHPF QRLRAL AS+ALPLALAG A   +APAA AQKRLA DAAPDDIFLALRQ
Sbjct: 1   MSMRPKNHPFKQRLRALVASMALPLALAGVAAFALAPAAQAQKRLAADAAPDDIFLALRQ 60

Query: 61  AAASDNAALAQDLASRLSGYELASYVDYYRLKPRVRDYSASEQEIRDFLARWEGQAIADR 120
           AAA+DNAALAQDLASRLSGYELASYVDYYRLKPRVRDYSASEQEIRDFLARW+GQAI DR
Sbjct: 61  AAATDNAALAQDLASRLSGYELASYVDYYRLKPRVRDYSASEQEIRDFLARWDGQAIVDR 120

Query: 121 LRNDWLLALGKTGNWTVFDEQYPKFVLNDDTQVKCFALNSRALKGANVAEEARALLTNPK 180
           LRNDWLLALGKTGNW VFDEQYPKFVLNDDTQVKCFALNSRALKG NVAEEARALLTNPK
Sbjct: 121 LRNDWLLALGKTGNWAVFDEQYPKFVLNDDTQVKCFALNSRALKGENVAEEARALLTNPK 180

Query: 181 DYGQGCSDLIATLAQNGQFSDADVWFQIRQAAENGNATVARRAAVLVDSGDVSVTQVMER 240
           DYGQGCSDLIATLAQNGQFS ADVWFQIRQAAENGNATVARRAAVLVDSGDVSVTQVM+R
Sbjct: 181 DYGQGCSDLIATLAQNGQFSQADVWFQIRQAAENGNATVARRAAVLVDSGDVSVTQVMDR 240

Query: 241 PALMLAKGPGRGAANHQLYIIALGRIAKSNPTQAATYLSEA-RTLTAQEAALGWAQIALA 299
           PALMLAKGPG+G ANHQLYIIALGRIAKSNP QAATYL++A R LT+QEAA  WAQIALA
Sbjct: 241 PALMLAKGPGKGVANHQLYIIALGRIAKSNPAQAATYLNDAGRNLTSQEAAQAWAQIALA 300

Query: 300 ASYKLAPEASDYWRRAKEAPLSQDAMQWKVRMALRDGDWKTVRKTIEAMPAPLRSDTTWV 359
           ASYKLAPEASDYWRRAK+ PL+QDAMQWKVRMALRDGDWKTVR+TIEAMPAPLRSDT WV
Sbjct: 301 ASYKLAPEASDYWRRAKDTPLTQDAMQWKVRMALRDGDWKTVRRTIEAMPAPLRSDTAWV 360

Query: 360 YWLGRALKEDGQTEAARRLFESIAPNFSFYGQLALEELGQKISIPPGPTPPGAGEVALYS 419
           YWLGRALKEDGQ +AARRLFESIAPNFSFYGQLALEELGQKI+IPPGPTPPGAGEVALYS
Sbjct: 361 YWLGRALKEDGQHDAARRLFESIAPNFSFYGQLALEELGQKITIPPGPTPPGAGEVALYS 420

Query: 420 QNAGFRRSLKFYQLNLRFEAIREWNWELRNMNDRQLLAAAEYARQNDVLDRMVNTSDRTK 479
           QNAGF+RSLKFYQLNLRFEAIREWNWELRNM DRQLLAAAEYARQNDVLDRMVNTSDRTK
Sbjct: 421 QNAGFKRSLKFYQLNLRFEAIREWNWELRNMTDRQLLAAAEYARQNDVLDRMVNTSDRTK 480

Query: 480 SEFDFTQRFPAPHLPEMNAATRPLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPA 539
           SEFDFTQRFPAPHLPEMNAAT+PLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPA
Sbjct: 481 SEFDFTQRFPAPHLPEMNAATKPLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPA 540

Query: 540 TAKFVAKKIGMSEFTVDQVNDINTNLLLGTSYLDMVLNNLDGSETLATAGYNAGPGRPRT 599
           TAKFVA+KIGMSEFT DQVNDINTNLLLGTSYLDMVLNNL+GSETLATAGYNAGPGRPRT
Sbjct: 541 TAKFVARKIGMSEFTADQVNDINTNLLLGTSYLDMVLNNLEGSETLATAGYNAGPGRPRT 600

Query: 600 WRASLPRPVEGAIFAEIIPFNETRGYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPNSN 659
           WRA+LPR VEGAIFAEIIPFNETRGYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPNSN
Sbjct: 601 WRATLPRTVEGAIFAEIIPFNETRGYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPNSN 660

Query: 660 VATDLP 665
           VATDLP
Sbjct: 661 VATDLP 666


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,920,446
Number of extensions: 77080
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 574
Effective length of database: 1,188,985
Effective search space: 682477390
Effective search space used: 682477390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)