BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4139.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313569|ref|YP_003777661.1| NADH-ubiquinone oxidoreductase ...   593   e-171

>gi|300313569|ref|YP_003777661.1| NADH-ubiquinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 322

 Score =  593 bits (1529), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 291/322 (90%), Positives = 305/322 (94%)

Query: 1   MAVKKILVIGGSGFIGTRLIELLGSSTGYRVMVPTRRYERAKHLLVSPVVGVVQANIHDD 60
           MA KKILVIGGSGFIGTRL+ELLGSST YRVMVPTRRYERAKHLLVSPVV VVQANIHDD
Sbjct: 1   MAFKKILVIGGSGFIGTRLVELLGSSTDYRVMVPTRRYERAKHLLVSPVVTVVQANIHDD 60

Query: 61  AVLARLVAEADVVINLVGILQSRPARGGAPYGPDFERQHVLLPRRIVAACVQQGVPRYLH 120
           A LARLVAEADVVINLVGILQSRPARGGA YGPDFERQHVLLPRRIVAACVQQGV RYLH
Sbjct: 61  AALARLVAEADVVINLVGILQSRPARGGAAYGPDFERQHVLLPRRIVAACVQQGVKRYLH 120

Query: 121 MSALCADAQGPSMYLRSKAAGEQEALSAAALDVAIFRPSVVFGEGDHFINMFAGLNRAFP 180
           MSALCADA+GPSMYLRSKAAGEQEALSA +LDVAIFRPSVVFGEGD+F+NMFAGLNR FP
Sbjct: 121 MSALCADAKGPSMYLRSKAAGEQEALSAPSLDVAIFRPSVVFGEGDNFLNMFAGLNRMFP 180

Query: 181 IIPLGSPDARFQPVYVGDVAQAFMAALHLPRLGGKVFELGGPKQYTLRELVRLSGWYCGH 240
           +IPLGSPDARFQPVYVGDVAQAF+ AL LPRLGGKVFELGGPKQYTLRELVRLSGWY GH
Sbjct: 181 VIPLGSPDARFQPVYVGDVAQAFVNALALPRLGGKVFELGGPKQYTLRELVRLSGWYSGH 240

Query: 241 PRPIIGLPDALGWLQAFVLEHLPGKLMSRDNVASMRVDNVLHGPIAPELQLTPRALEEVV 300
           PRPI+GLPDALGWLQAF LEHLPGKLMSRDNVASM+VDNVLH P+A EL+LTP+++EEVV
Sbjct: 241 PRPIVGLPDALGWLQAFALEHLPGKLMSRDNVASMQVDNVLHAPLAAELRLTPKSVEEVV 300

Query: 301 PTYLAPRSPQQQFDFFRSTARR 322
           P YL PRSPQQQFD FRSTARR
Sbjct: 301 PGYLCPRSPQQQFDLFRSTARR 322


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,088,165
Number of extensions: 48440
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)