BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4134.p (1195 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 2294 0.0 gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 1350 0.0 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 2294 bits (5944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1108/1199 (92%), Positives = 1156/1199 (96%), Gaps = 4/1199 (0%) Query: 1 MNAPLPAGQRLLLDDVSLDDKFALERGRVFMTGIQALIRLPMLQRQYDERAGLNTAGFIT 60 MNAPLPAGQRLLLDDVSLDDK+ LERGRVFMTGIQAL+RLPMLQRQYD+RAGLNTAGFIT Sbjct: 1 MNAPLPAGQRLLLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFIT 60 Query: 61 GYRGSPLGSVDQTAEKARQYLQAKQIKFHPGMNEDLAATSVWGTQQVNLFPGAQYDGVFS 120 GYRGSPLG+VDQTAEKAR+YL+AKQIKFHPGMNEDLAATSVWGTQQVNLF GAQYDGVFS Sbjct: 61 GYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS 120 Query: 121 LWYGKGPGVDRCGDVFKHANMAGTSQHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180 LWYGKGPGVDRCGDVFKHANMAGTS+HGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV Sbjct: 121 LWYGKGPGVDRCGDVFKHANMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180 Query: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVKIQIPQDFELP 240 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERV+IQ+P DFELP Sbjct: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELP 240 Query: 241 PDGLNIRLPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 300 PDGLNIR PDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT Sbjct: 241 PDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 300 Query: 301 RQALEDLGIDEQVAADIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK 360 RQALEDLGIDEQ A DIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK Sbjct: 301 RQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK 360 Query: 361 EELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPASYELNPAQIARAIATRISRYF 420 EELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPA+YELNPAQIARAIATRISRYF Sbjct: 361 EELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYF 420 Query: 421 AGHPVEQRVRTRVAYLEAKEAALNISSKPDPNKDRVPHFCSGCPHNTSTKLPEGSRGLAG 480 AGHPVEQ+VR RVAYLEAKEA LNISSKPDP+KDR+PHFCSGCPHNTSTKLPEGSRGLAG Sbjct: 421 AGHPVEQQVRARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAG 480 Query: 481 IGCHYMVTWMDRETQLFTHMGGEGVTWVGQAPFTTEKHVFANLGDGTYFHSGLLAVRASV 540 IGCHYMVTWMDRET+LFTHMGGEGVTWVGQAPFT EKHVFANLGDGTYFHSGLLAVRASV Sbjct: 481 IGCHYMVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASV 540 Query: 541 AAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVSPIIVVTDEPDKYPAGTR 600 AAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENV PIIVVTDEPDKYP GT+ Sbjct: 541 AAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQ 600 Query: 601 WAEGVTIRHRSELDAVQRELRERPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEA 660 WAEGVTIRHRSELDAVQRELRE+PGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEA Sbjct: 601 WAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEA 660 Query: 661 VCEACGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP 720 VCE CGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP Sbjct: 661 VCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP 720 Query: 721 ARNKAATGPALPALPEPILPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLD 780 AR +A GPALP+LPEP+LPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLD Sbjct: 721 ARAQADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLD 780 Query: 781 MSGLAQKGGPVMSHVRVAEAPDHIYSTRVGTGMADLVIGCDVIVTANRDALSRMGEGRTH 840 MSGLAQKGGPVMSHVRVAE HI+STRVGTGMADLVIGCDVIVTA+RDALSRMGEGRTH Sbjct: 781 MSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTH 840 Query: 841 AAVNSTQLPTAAFVRNPDWQFPTAFSEGEIAKACGRDNLALIDAGRIATALMGDAIATNM 900 AAVNSTQ+PTAAFVRNPDWQFPTA SEGEIA+ACGRDNL+L+DAGRIATALMGDAIATNM Sbjct: 841 AAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNM 900 Query: 901 FMLGYAWQKAWVPLSEAALLRAIELNALQVEFNRQAFAWGRVAAHDLDFVLAAAGRNGMT 960 FMLGYAWQK WVPLSEAALLRAIELNALQVEFN+QAFAWGR AAHD+ FVLAAAGRNGM+ Sbjct: 901 FMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMS 960 Query: 961 AQVIAFKRTPTLEELVQRRESFLSGYQNAAYGRSYRDFVEQVRAREAALGEAGRGLKLSR 1020 AQVI FKRTPTL+ELV+RR +FL+ Y NAAY RSYRDFVEQVRARE+ALGEAGRGLKLSR Sbjct: 961 AQVIEFKRTPTLDELVERRVAFLTDYLNAAYARSYRDFVEQVRARESALGEAGRGLKLSR 1020 Query: 1021 AVATYLFKLMAYKDEYEVARLHTDPAFRAKIAGMFEGDYKLRFHLAPPLLARRDEQGHLR 1080 AVA+YLFKLMAYKDEYEVARLH DPAFRAKIAGMFEGDYKLRFHLAPPLLA+RD++GHLR Sbjct: 1021 AVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLR 1080 Query: 1081 KQSFGSWMMPVFGVLARLRFLRGTAFDPFGYTQERRQERALITDYRHTLTQLLAQLTPEN 1140 KQ+FGSWMMPVFGVLARLRFLRGTA DPF YT+ERRQERALIT+YR TL++LL +LTPEN Sbjct: 1081 KQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDRLTPEN 1140 Query: 1141 LEQVIAVARIPEEIRGYGHVKERHLKAAQHKQAALLAQLQKESS----HSPQGGGKQAA 1195 LEQ+ AVARIPEEIRGYGHVKERHLKAA KQAALLAQL + ++ SP GGG+QAA Sbjct: 1141 LEQITAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQAAAQTQPQSPPGGGQQAA 1199 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 1350 bits (3495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 679/1175 (57%), Positives = 854/1175 (72%), Gaps = 32/1175 (2%) Query: 13 LDDVSLDDKFALERGRVFMTGIQALIRLPMLQRQYDERAGLNTAGFITGYRGSPLGSVDQ 72 L VSLDDK+ G ++++GIQAL+RLP+LQ+ D AGLNTAGFI+GYRGSPLG +D+ Sbjct: 14 LAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFISGYRGSPLGGLDE 73 Query: 73 TAEKARQYLQAKQIKFHPGMNEDLAATSVWGTQQVNLFPGAQYDGVFSLWYGKGPGVDRC 132 A+ +L A ++KF PG+NED+AAT+VWGTQQV L + YDGV+++WYGKGPGVDRC Sbjct: 74 ALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVYAMWYGKGPGVDRC 133 Query: 133 GDVFKHANMAGTSQHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDY 192 GDV KH N AGTS HGGVL++AGDDH A SST HQS+HI A IP+LYP +VQEYLD Sbjct: 134 GDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDL 193 Query: 193 GLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVKIQIPQDFELPPDGLNIRLPDTV 252 GLHGWAMSRY+G V K + D VES SV DP RV+I++P DF +P GLN RL Sbjct: 194 GLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNARLSTDT 253 Query: 253 LG-----QEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDL 307 LG QEA M +YK YAALAYARAN+LNR++ DSP+AR+GII +GKSYLD +AL +L Sbjct: 254 LGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLEALSEL 313 Query: 308 GIDEQVAADIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWR 367 GIDE AA+IG+RL+KV M WPLE +GVREFAQGLDEILVVEEKRQ++EYQLKE+LYNWR Sbjct: 314 GIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWR 373 Query: 368 DDVRPRVVGKFDDTGEWSGSQREGHGNWLLPASYELNPAQIARAIATRISRYFAGHPVEQ 427 DDVRPRV+GKFD+ GEW + G WLL + + + AQIAR IA RI+R+ Sbjct: 374 DDVRPRVIGKFDEKGEWVAPR----GEWLLTSKADFSVAQIARVIAARIARFH----TSD 425 Query: 428 RVRTRVAYLEAKEAALNISSKPDPNKDRVPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMV 487 ++ R+A+L+AK+A L+ + P R ++CSGCPHN+ST++PEGS LAGIGCH M Sbjct: 426 LIKARLAFLDAKDAVLSKAVNTPP---RPAYYCSGCPHNSSTRVPEGSFALAGIGCHVMA 482 Query: 488 TWMDRE-TQLFTHMGGEGVTWVGQAPFTTEKHVFANLGDGTYFHSGLLAVRASVAAKVNI 546 T + E +L THMGGEG W+GQAPF+ HVFANLGDGTYFHSG LA+RA+VAAKVN+ Sbjct: 483 TAIYPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKVNM 542 Query: 547 TYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVSPIIVVTDEPDKYPAGTRWAEGVT 606 TYKILYNDAVAMTGGQ DG + MI++Q+AAE V I +V+++P +Y + VT Sbjct: 543 TYKILYNDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSSLPAAVT 602 Query: 607 IRHRSELDAVQRELRERPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEACG 666 + R ++DAVQRELRE PGV+ +IYDQTCA+EKRRRRK+ YPDP +R IN AVCE CG Sbjct: 603 VHDRKDMDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRLFINAAVCEGCG 662 Query: 667 DCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP----AR 722 DC VQSNC S+ PLET+ GRKR I+QSSCNKDYSCV GFCPSFVTV GG+L+K +R Sbjct: 663 DCGVQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKSRTGVSR 722 Query: 723 NKAATGPALPALPEPILPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLDMS 782 + L LP+P+LP P+ IL+ G+GGTGVITIG ++ MAAH+EG+ SVLDM+ Sbjct: 723 QEERDDFGL--LPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMT 780 Query: 783 GLAQKGGPVMSHVRVAEAPDHIYSTRVGTGMADLVIGCDVIVTANRDALSRMGEGRTHAA 842 G++QK G V SHVR+A D I + R+ TG ADLV+GCD++ DA+S+M GRT A Sbjct: 781 GMSQKNGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAV 840 Query: 843 VNSTQLPTAAFVRNPDWQFPTAFSEGEIAKACGRDNLALIDAGRIATALMGDAIATNMFM 902 VN Q P F RNPDW+FP + I ++ G+ IDA R+ATALMGD+IATN+FM Sbjct: 841 VNLHQQPPGQFARNPDWEFPVEEVKALIVESVGQ-QADFIDATRLATALMGDSIATNLFM 899 Query: 903 LGYAWQKAWVPLSEAALLRAIELNALQVEFNRQAFAWGRVAAHDLDFVLAAAGRNGMTAQ 962 LGYAWQ+ +PL+EA+LLRAIELN + V+ N+ AFAWGR AA DL V A + AQ Sbjct: 900 LGYAWQRGELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIA----VPAQ 955 Query: 963 VIAFKRTPTLEELVQRRESFLSGYQNAAYGRSYRDFVEQVRAREAALGEAGRGLKLSRAV 1022 + +L++L++RR S L+ YQ+AAY + + VE VRA EAALG KL+ AV Sbjct: 956 PVLLHLPQSLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSD----KLATAV 1011 Query: 1023 ATYLFKLMAYKDEYEVARLHTDPAFRAKIAGMFEGDYKLRFHLAPPLLARRDEQGHLRKQ 1082 A L +LMAYKDEYEVARL+T+ F+ ++A FEGD+ L FHLAPPLLAR+D QGHL K Sbjct: 1012 ARNLSRLMAYKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKDGQGHLLKA 1071 Query: 1083 SFGSWMMPVFGVLARLRFLRGTAFDPFGYTQERRQERALITDYRHTLTQLLAQLTPENLE 1142 +G W+M F +LAR++ LRG D FG+T+ERR ER LI YR + LL +LT NL Sbjct: 1072 RYGGWVMQAFKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAANLA 1131 Query: 1143 QVIAVARIPEEIRGYGHVKERHLKAAQHKQAALLA 1177 I +A++PE++RGYGHVK + + A + +Q LLA Sbjct: 1132 TAIELAQLPEQVRGYGHVKLKAVHAMRTRQQQLLA 1166 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,734,957 Number of extensions: 159908 Number of successful extensions: 455 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 444 Number of HSP's successfully gapped: 2 Length of query: 1195 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1099 Effective length of database: 1,165,310 Effective search space: 1280675690 Effective search space used: 1280675690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)