BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4133.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313562|ref|YP_003777654.1| polypeptide chain release facto...   457   e-130
gi|300311474|ref|YP_003775566.1| adenine-specific methylase/meth...    89   3e-19

>gi|300313562|ref|YP_003777654.1| polypeptide chain release factors
           methylase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  457 bits (1175), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/277 (87%), Positives = 257/277 (92%)

Query: 1   MPALSSYAGCTLATVLKTAPLEPLENRILLCHALRLTRVQLITQSERRLDAAESERLTAL 60
           MP L SYAGCTLATVLKTAPL+PLENRILLCHALRLTRVQLITQSER+L AAE+E L AL
Sbjct: 1   MPILPSYAGCTLATVLKTAPLDPLENRILLCHALRLTRVQLITQSERQLSAAEAETLAAL 60

Query: 61  YARRLRGEPIAYIVGWREFYGLDLRVTPDVLIPRPDTELLVELAMERLPQAGSLLDMGTG 120
            ARRLRGEPIAYIVG REFYGLDLRV+PDVLIPRPDTELLVELA+ERLPQ GS LDMGTG
Sbjct: 61  LARRLRGEPIAYIVGQREFYGLDLRVSPDVLIPRPDTELLVELALERLPQGGSALDMGTG 120

Query: 121 SGAIAIAIAHTRADAAVTALDASAAALAIARENASTHQVRVRLLESDWYGALASEEQFDV 180
           SGAIA+AIAHTR DA VTALDAS AALAIARENASTHQVRVRLLESDWYGAL +++ FD+
Sbjct: 121 SGAIAVAIAHTRPDAQVTALDASPAALAIARENASTHQVRVRLLESDWYGALDADQAFDL 180

Query: 181 IASNPPYIVAGDLHLSQGDLRFEPLDALTDHADGLCDLRTIIDGAPAHLKAGGWLLMEHG 240
           I SNPPYIVAGD+HLSQGDLRFEP+DALTDHADGL DLRTII+GAPAHLKAGGWLLMEHG
Sbjct: 181 IVSNPPYIVAGDIHLSQGDLRFEPVDALTDHADGLSDLRTIIEGAPAHLKAGGWLLMEHG 240

Query: 241 YDQATAVRALLAGTGFTDVQSWRDLAGIERVSGARLG 277
           YDQA AVRALL G G+ +VQSWRDLAGIERVSGARLG
Sbjct: 241 YDQAAAVRALLTGGGWREVQSWRDLAGIERVSGARLG 277


>gi|300311474|ref|YP_003775566.1| adenine-specific
           methylase/methyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 296

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 120/234 (51%), Gaps = 26/234 (11%)

Query: 29  LLCHALRLTRVQLITQSERRLDAAESERLTALYARRLRGE-PIAYI-----VGWREFYGL 82
           L+ H L+L   QL    + RL   E   +  +  RR +   P AYI     +G   FY  
Sbjct: 41  LILHTLKLPLDQLDPFLDARLLPDEIAAVMRVIERRSKDRVPAAYITHEAWLGAYRFY-- 98

Query: 83  DLRVTPDVLIPRPDTELLVELAMERL------PQA-GSLLDMGTGSGAIAIAIAHTRADA 135
              V   V++PR     + EL  +        P+A  + LD+ TGSG + I +A    +A
Sbjct: 99  ---VDERVIVPR---SFIAELIPQHFSPWIQDPEAIENALDLCTGSGCLPILLADAFPNA 152

Query: 136 AVTALDASAAALAIARENASTHQV--RVRLLESDWYGALASEEQFDVIASNPPYIVAGDL 193
            + A+D SA ALA+AR+N   +Q+  R+ L+ESD Y  L    ++D+I SNPPY+ +G +
Sbjct: 153 QIDAVDISADALAVARKNVDEYQLQERINLVESDLYTQLPL-RKYDLIISNPPYVNSGSM 211

Query: 194 -HLSQGDLRFEPLDALTDHADGLCDLRTIIDGAPAHLKAGGWLLMEHGYDQATA 246
             L Q  LR EP  AL    DG+  +R I+ GA   L   G L++E G ++A A
Sbjct: 212 AKLPQEYLR-EPQLALAGGEDGMDLVRKIVAGAAERLTPEGVLVVEIGNERAFA 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 840,903
Number of extensions: 33582
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)