BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4131.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313560|ref|YP_003777652.1| peptide chain release factor 1 ...   717   0.0  
gi|300312096|ref|YP_003776188.1| peptide chain release factor 2 ...   222   3e-59

>gi|300313560|ref|YP_003777652.1| peptide chain release factor 1
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/359 (96%), Positives = 353/359 (98%)

Query: 1   MKPSMLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHDYVQANE 60
           MKPSMLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYH+YVQA E
Sbjct: 1   MKPSMLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHEYVQAAE 60

Query: 61  DIRTAQELLSDPDMKLFAQEEIDAAKARMQALELDLQKMLLPKDPNDERNIFLEIRAGTG 120
           DIRTAQELL+DPDMK FAQEEID AKARM+ LELDLQKMLLPKDPNDERNIFLEIRAGTG
Sbjct: 61  DIRTAQELLADPDMKAFAQEEIDGAKARMEGLELDLQKMLLPKDPNDERNIFLEIRAGTG 120

Query: 121 GDESALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGFGAYSRLKFESG 180
           GDESALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVG GAYSRLKFESG
Sbjct: 121 GDESALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGLGAYSRLKFESG 180

Query: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKT 240
           GHRVQRVPATETQGRIHTSACTVAVMPEADEV DV+INPADIRIDTYRASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVGDVEINPADIRIDTYRASGAGGQHINKT 240

Query: 241 DSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSKEAATRKSLIGS 300
           DSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQS+EAATRKSLIGS
Sbjct: 241 DSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSEEAATRKSLIGS 300

Query: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNALITEHQAELLAQLGDD 359
           GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNALITEHQAELLAQLGDD
Sbjct: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNALITEHQAELLAQLGDD 359


>gi|300312096|ref|YP_003776188.1| peptide chain release factor 2
           [Herbaspirillum seropedicae SmR1]
          Length = 337

 Score =  222 bits (566), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 201/338 (59%), Gaps = 16/338 (4%)

Query: 13  AERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHDYVQANEDIRTAQELLS-- 70
           +E+LE++N+ L   +        + + +E   L  +V   H  ++ + ++  A++L    
Sbjct: 3   SEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIV---HTLIKIDSELTDARDLFEMA 59

Query: 71  --DPDMKLFAQEEIDAAKARMQALELDLQKMLLPKDPNDERNIFLEIRAGTGGDESALFA 128
             + D       E DA   +    E++ ++M     P D  N F++I+AG GG E+  +A
Sbjct: 60  REEKDEDTIIAIEGDAENLKKMVEEMEFRRMF--SGPMDANNCFIDIQAGAGGTEAQDWA 117

Query: 129 GDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGFGAYSRLKFESGGHR-VQRV 187
             LLR Y RY ER+ ++ EI+  S+ E+ G K    ++ G  AY  L+ E+G HR V++ 
Sbjct: 118 SMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKS 177

Query: 188 PATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAVRIT 247
           P   + GR HTS  ++ V PE DE  +++INPAD+R+DTYRASGAGGQHINKTDSAVR+T
Sbjct: 178 PFDSSNGR-HTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLT 236

Query: 248 HLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSKEAATR--KSLIGSGDRSE 305
           H P+GIVV+CQ+DRSQH+N+A+A  +L A++ +++LR++ S++      K+ +G G    
Sbjct: 237 HAPSGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWG---H 293

Query: 306 RIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNA 343
           +IR+Y   Q R+ D R N        ++DGD+D+   A
Sbjct: 294 QIRSYVLDQSRIKDLRTNFETGNTKAVLDGDIDDFIAA 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,070,636
Number of extensions: 43549
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)