BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4120.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 520 e-149 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 179 2e-46 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 176 2e-45 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 172 2e-44 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 171 6e-44 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 520 bits (1338), Expect = e-149, Method: Compositional matrix adjust. Identities = 250/261 (95%), Positives = 256/261 (98%) Query: 1 MSEPFVDFRHVYLAYDGATEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQAN 60 MSEPFVDFRHVYLAYDGA EFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQ N Sbjct: 1 MSEPFVDFRHVYLAYDGAAEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPN 60 Query: 61 RGSVVINGQPVTGPLKFVGMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTE 120 RGSVVI+GQ VTGPLKFVGMAFQAPTLLPWRTTL+NVLLPLEIVEPYRRDFKQKKA+YTE Sbjct: 61 RGSVVIDGQTVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTE 120 Query: 121 RALALLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREEL 180 RAL+LLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREEL Sbjct: 121 RALSLLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREEL 180 Query: 181 WCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVKRDNPLPRPCDLETTY 240 WCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVV+R+NPLPRPC LETTY Sbjct: 181 WCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVRRENPLPRPCPLETTY 240 Query: 241 TDGFNALVHELREHIGQVRNT 261 TDGFNALVHELREHIG VRNT Sbjct: 241 TDGFNALVHELREHIGHVRNT 261 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 179 bits (454), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 138/234 (58%), Gaps = 13/234 (5%) Query: 4 PFVDFRHVYLAYDGATEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGS 63 P + + V Y T A++++ L GEF++++GPSGCGKST +K+ GL++ + G Sbjct: 18 PVLSAQRVEKTYRNGTH-ALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGH 76 Query: 64 VVI---NGQPVTGPLKFVGMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTE 120 + N V P + + M FQ TL+PW T +NV LPL++ R AQ Sbjct: 77 IRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPR-------AQADA 129 Query: 121 RALALLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREEL 180 R A LK VGL+ + P +LSGGMQ RASI RAL P +LL+DEPFGALD FTR +L Sbjct: 130 RVAASLKRVGLESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKL 189 Query: 181 WCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIV--VKRDNPLPR 232 LRD+W+ + V+ VTH + EA FL+ + VM+ RPGR++ V D P PR Sbjct: 190 DADLRDIWSRQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDAPGPR 243 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 176 bits (446), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/201 (46%), Positives = 128/201 (63%), Gaps = 7/201 (3%) Query: 23 VEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGSVVINGQPVTGPLKFVGMAF 82 +E+ + +GE +A+VGPSGCGKST + +A GL++ + GSV +GQ + GP + F Sbjct: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMF 77 Query: 83 QAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTERALALLKTVGLDGYADKFPWQL 142 Q L PW T +NV L LE + +KKA E+A L+ V L G+ +P Q+ Sbjct: 78 QENALYPWLTLQQNVALALEF-----QSVDKKKA--AEQARVWLENVKLKGFEHYYPHQV 130 Query: 143 SGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILVTHDL 202 SGGM+QRA++ RA I +PK LLLDEPFGALDA TR L LRDL ++ V+LVTHD+ Sbjct: 131 SGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDV 190 Query: 203 REAAFLADTIYVMSKRPGRIV 223 EA FLAD I+V S RP +++ Sbjct: 191 DEALFLADRIFVFSPRPAKVL 211 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/237 (40%), Positives = 134/237 (56%), Gaps = 10/237 (4%) Query: 4 PFVDFRHV---YLAYDGATEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQAN 60 P ++ R+V ++ DG A+ D + GEF+A+VGP+GCGKST + L TGL + Sbjct: 20 PAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPT 79 Query: 61 RGSVVINGQPVTGPLKFVGMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTE 120 G V + GQPV G +G FQ + PWR+ ENV P R Q KAQ Sbjct: 80 LGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENV-----AAGPLFRG--QPKAQAHA 132 Query: 121 RALALLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREEL 180 A ++ VGLD + D +P QLSGGM++R ++ + I+ P++LL+DEPF ALD TR + Sbjct: 133 LADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLM 192 Query: 181 WCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVKRDNPLPRPCDLE 237 L LW+ +V+ VTHDL EA LAD +YV++ RP + LPRP +E Sbjct: 193 QDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVME 249 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 171 bits (433), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 135/241 (56%), Gaps = 12/241 (4%) Query: 22 AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGSVVINGQPVTGPLKFVGMA 81 A++ + L G F+ +G SGCGKST + G + G + ++GQPV+GP G+ Sbjct: 21 ALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERGVV 80 Query: 82 FQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTERALALLKTVGLDGYADKFPWQ 141 FQ +LLPW++ +NV L L+ + D + ERA LL+ VGL +A P++ Sbjct: 81 FQKDSLLPWKSVQDNVALGLKFAGVSKSDSR-------ERAQELLRLVGLQDFARAAPYE 133 Query: 142 LSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILVTHD 201 LSGGM+QR + RAL PK+LL+DEPFGALD+ TRE++ +L +WA V +TH Sbjct: 134 LSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHS 193 Query: 202 LREAAFLADTIYVMSKRPGRIVVKRDNPLPR----PCDLETTYTD-GFNALVHELREHIG 256 + EA FL + VMS RPGRIV + + R C+ T+ F L E+R + Sbjct: 194 IEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPAFAELREEIRAIVH 253 Query: 257 Q 257 Q Sbjct: 254 Q 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 836,925 Number of extensions: 34549 Number of successful extensions: 464 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 132 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)