BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4119.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313546|ref|YP_003777638.1| nitrate/sulfonate/bicarbonate A...   641   0.0  

>gi|300313546|ref|YP_003777638.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 373

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/355 (89%), Positives = 332/355 (93%), Gaps = 2/355 (0%)

Query: 10  FQTNK-EGKSTVYSSKFFKIGMSLLLS-ASCSLAVAQETKIKFQLDWRFEGPAALFLVAK 67
           F++N+  G   + S +F     +LLL   S S   AQ+T+IKFQLDWRFEGPAALFLVAK
Sbjct: 19  FKSNRFSGDLPMRSFRFLGCSAALLLGLVSASSTFAQDTRIKFQLDWRFEGPAALFLVAK 78

Query: 68  SKGYFAQEKLDVTIDAGNGSGNAVNRVASGTYDMGFADMAALMEFTANNPDAPGKPVAVM 127
           SKGYFAQEKLDVTIDAGNGSGNAVNRVASGTYDMGFADMAALMEFTANNPDAPGKPVAVM
Sbjct: 79  SKGYFAQEKLDVTIDAGNGSGNAVNRVASGTYDMGFADMAALMEFTANNPDAPGKPVAVM 138

Query: 128 MVYNDTPAAVFSLKKSGIKKPADLVGKKLGAPVFDAGRRAYPIFAKANGLDASKAQWTSM 187
           MVYNDTPAAVFSLKKSGIKKPADL GKKLGAPVFDAGRRAYPIFAKANGLDASKAQWTSM
Sbjct: 139 MVYNDTPAAVFSLKKSGIKKPADLAGKKLGAPVFDAGRRAYPIFAKANGLDASKAQWTSM 198

Query: 188 DPPLRETMLARGDVDAITGFYFTSLLNLNARGIKDEDINVMMYPDYGVRLYGNTIIASEA 247
           DPPLRETMLARGDVDAITGFYFTSLLNLNARGIKDEDINVMMYPDYGVRLYGNTIIAS+ 
Sbjct: 199 DPPLRETMLARGDVDAITGFYFTSLLNLNARGIKDEDINVMMYPDYGVRLYGNTIIASDT 258

Query: 248 MIKNKPEAIKGFLRAFAKASRDVMANPEAAIKVLKERDGLIDEKLELRRLKLAIASAIAT 307
           M+KNKPEAIKGFLRAFAKASRDVMA+PEAAIKVLKERDGLIDEKLELRRLKLAIASAIAT
Sbjct: 259 MVKNKPEAIKGFLRAFAKASRDVMAHPEAAIKVLKERDGLIDEKLELRRLKLAIASAIAT 318

Query: 308 PHAKAEGYGQVNSPRLTLMASQVSDAYGTKTRVNADKIWNGSFLPSKAELDVFPK 362
           PHAK+EGYGQV  PRLTLMASQVSDAYGTKTRVNADKIWNGSFLP+KAELDVFPK
Sbjct: 319 PHAKSEGYGQVYGPRLTLMASQVSDAYGTKTRVNADKIWNGSFLPTKAELDVFPK 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,076,039
Number of extensions: 43861
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)