BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4115.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313542|ref|YP_003777634.1| hydantoin racemase [Herbaspiril...   450   e-128

>gi|300313542|ref|YP_003777634.1| hydantoin racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 244

 Score =  450 bits (1158), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/244 (91%), Positives = 235/244 (96%)

Query: 1   MRIKLINPNTTMSMTAAMTACARTVAAPGTEITGVSPQMGPASIESHYDEALAVPGLLQE 60
           MRIKLINPNTT SMT AMTACAR VAA GTE+TGVSP+MGPASIESHYDEALAVPGLLQE
Sbjct: 1   MRIKLINPNTTWSMTEAMTACARQVAAAGTEVTGVSPEMGPASIESHYDEALAVPGLLQE 60

Query: 61  IDQGERDGYDAYVIACFGDPGLAAARELARGPVIGIAEAAMHMASLIAPAFSVVTTLGRT 120
           I++GERDGYDAYVIACFGDPGL+AARELA+GPVIGIAEAAMHMASLIAP+FSVVTTL RT
Sbjct: 61  IERGERDGYDAYVIACFGDPGLSAARELAQGPVIGIAEAAMHMASLIAPSFSVVTTLART 120

Query: 121 SGMAWHLAERYGMQRFCRNVRACEIAVLELENPASDARARITEECRRALAEDDAQAIVLG 180
           SGMAWHLAERYGMQRFCRNVRACEIAVLELE+PASDARARIT+ECRRALAED A+AIVLG
Sbjct: 121 SGMAWHLAERYGMQRFCRNVRACEIAVLELEDPASDARARITDECRRALAEDGAEAIVLG 180

Query: 181 CAGMAELCAAIGRDIGAPVIDGVTAAVKLAESLVALGLGTAKRGEWAQPLPKAYHGLLSG 240
           CAGMAELCAAIGRDIGAPVIDGVTAAVKLAESLVALGLGTAKRGE A+PLPKAYHGLL  
Sbjct: 181 CAGMAELCAAIGRDIGAPVIDGVTAAVKLAESLVALGLGTAKRGELARPLPKAYHGLLRE 240

Query: 241 FARS 244
           FARS
Sbjct: 241 FARS 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 760,262
Number of extensions: 32697
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)