BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4114.p
         (481 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313541|ref|YP_003777633.1| cytosine/purine/uracil/thiamine...   922   0.0  

>gi|300313541|ref|YP_003777633.1|
           cytosine/purine/uracil/thiamine/allantoin permease
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 481

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/480 (96%), Positives = 474/480 (98%)

Query: 1   MTTDSSPAASSYHSGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGSLF 60
           MTTDSSPAASSY +GADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGSLF
Sbjct: 1   MTTDSSPAASSYLAGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGSLF 60

Query: 61  ALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIRGL 120
           ALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIRGL
Sbjct: 61  ALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIRGL 120

Query: 121 IAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSTLGWGGFLLLWVMQALV 180
           IAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLS LGWGGFLLLWV+QALV
Sbjct: 121 IAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSALGWGGFLLLWVLQALV 180

Query: 181 FWNGMETIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMITA 240
           FWNGMETIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMITA
Sbjct: 181 FWNGMETIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMITA 240

Query: 241 ISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVFGE 300
           ISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVFGE
Sbjct: 241 ISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVFGE 300

Query: 301 LITDPVETVSRIDSTTAAVIGALTFLVATIGINIVANFVSAAFDFSNLSPSRISWRAGGM 360
           LITDPVETVSRIDSTTAAVIGALTFL ATIGINIVANFVSAAFDFSNLSPSRISWRAGGM
Sbjct: 301 LITDPVETVSRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAGGM 360

Query: 361 IAATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILLADYYLVKQRQVKVEDLYTLR 420
           +AATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILLADYYL+K+R+VKVEDLYT+R
Sbjct: 361 MAATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILLADYYLIKRREVKVEDLYTMR 420

Query: 421 PEGRYWYTNGVNRDAVKALILAAAVCVACVMLPQLRKAADFSWFIGAGLGAVFYLMFVRK 480
           PEGRYWYTNGVNRDAVKAL+LAAAVCVACVMLPQLR AADFSWFIGA LGA+FYLMF RK
Sbjct: 421 PEGRYWYTNGVNRDAVKALVLAAAVCVACVMLPQLRAAADFSWFIGAALGALFYLMFARK 480


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,433,606
Number of extensions: 57660
Number of successful extensions: 239
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 392
Effective length of database: 1,198,455
Effective search space: 469794360
Effective search space used: 469794360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)