BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4111.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313538|ref|YP_003777630.1| hypothetical protein Hsero_4253...   321   2e-89

>gi|300313538|ref|YP_003777630.1| hypothetical protein Hsero_4253
           [Herbaspirillum seropedicae SmR1]
          Length = 181

 Score =  321 bits (822), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 145/181 (80%), Positives = 162/181 (89%)

Query: 1   MRKMIRGTMQWVLGGTMLATTAGCSMMPWTEAEDPTVVPYKTILSGSYQGFLRNWDEQRQ 60
           MRK IR +MQW+L    + +  GCSMMPW+E EDPTV+P+KT+LSGSYQGF++NWD+QRQ
Sbjct: 1   MRKTIRVSMQWMLAAATMVSAGGCSMMPWSEQEDPTVIPFKTVLSGSYQGFVKNWDDQRQ 60

Query: 61  PVFCALIRSRAEWDHWMLPAPVMNDKRPFGPSPDHFERKQYLVVARTMSAPDAAERPHVF 120
           PVFC LIRSRAEWD WM PAP M D+RP GPS DHFERKQYL+VARTM+APDAAERPHVF
Sbjct: 61  PVFCTLIRSRAEWDEWMQPAPTMGDRRPTGPSSDHFERKQYLLVARTMTAPDAAERPHVF 120

Query: 121 TPLSVRLRDGTLRLNYLYRTPASGASYRIKDYLMVSIPKERFTTGPVVFYENDRKVCEVE 180
           TPLSVRLRDGTLRLNYLYR PASGASYRIKDYLMVSIPK+R+TTGPVVFYENDRKVCE+ 
Sbjct: 121 TPLSVRLRDGTLRLNYLYRAPASGASYRIKDYLMVSIPKDRYTTGPVVFYENDRKVCEIN 180

Query: 181 R 181
           R
Sbjct: 181 R 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 614,135
Number of extensions: 25192
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)