BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4109.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312440|ref|YP_003776532.1| threonine efflux protein [Herba...   106   1e-24
gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...    80   8e-17

>gi|300312440|ref|YP_003776532.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  106 bits (265), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 4/202 (1%)

Query: 5   FLITSLIVVASPGTGALVTLNAGLSHGTRAAMVAATGCTLGIIPHMLLAITGLATVLHSS 64
           FL+ ++ +  +PG   L  L  G++ G +A +VAA G   G++ H LLA+ G A ++ + 
Sbjct: 7   FLLAAMTLTLAPGPDNLYVLTRGIAQGRKAGLVAAAGFCSGLVFHTLLAVLGFAALIKAY 66

Query: 65  PFCFELIQYAGVLYLLRMAWLVMKEKNLLSVERVQRPQT----YYEIIQNAVLVNFLNPK 120
           P  +  +QYAG  YL  +    ++  +                   I   +VL N LNPK
Sbjct: 67  PPAYHALQYAGAAYLAYLGVRTLRSASAGLALAADGQGAAAVPLRRIYWQSVLANMLNPK 126

Query: 121 LSIFFLAFLPQFIRSDDISPMWSMLSMSLVFMAMTLAIFALYGWFAAAVRDRVLRSHRAM 180
           +++FF+AFLPQF++ +       ML ++LVF+    AIF+    F+ AV     R   A 
Sbjct: 127 VTLFFIAFLPQFVQREAGHEALQMLVLALVFIVQAFAIFSAIALFSGAVGAYFRRRASAS 186

Query: 181 LWLRRTFAAAFVVLGVRLALAQ 202
           + L R    AF+ LG+R+AL +
Sbjct: 187 VHLNRLAGCAFIGLGIRMALPE 208


>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 80.5 bits (197), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 15/211 (7%)

Query: 5   FLITSLIVVASPGTGALVTLNAGLSHGTRAAMVAATGCTLGIIPHMLLAITGLATVLHSS 64
           F   + ++  SPG+GA+++++ GL++G R       G  + ++  +++A  G+ ++L +S
Sbjct: 9   FFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAGVGSLLVAS 68

Query: 65  PFCFELIQYAGVLYLLRMAW-----LVMKEKNLLSVERVQRP------QTYYEIIQNAVL 113
              F +I+ AG LYL+ + +      V  E+   +++           QT+++      L
Sbjct: 69  ETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRCMTGFL 128

Query: 114 VNFLNPKLSIFFLAFLPQFIRSDDISPMW-SMLSMSLVFMAMTLAIFALYGWFAAAVRDR 172
            N  NPK  +F +A LPQFI  D   P+W  +L +++  +A+ L +   Y  FAA+   R
Sbjct: 129 TNATNPKGIVFMVAVLPQFIDHD--RPLWLQLLVLAVTMVAVDLVVMHGYA-FAASRLQR 185

Query: 173 VLRSHRAMLWLRRTFAAAFVVLGVRLALAQR 203
             RS +A+    R F    +++G  L   +R
Sbjct: 186 FFRSQKAIRAQNRFFGGVLMLVGAGLFFFKR 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 586,085
Number of extensions: 21426
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 128 (53.9 bits)