BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4107.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 489 e-140 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 313 1e-86 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 286 1e-78 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 273 1e-74 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 272 2e-74 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 489 bits (1259), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/244 (98%), Positives = 242/244 (99%) Query: 1 MPLIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 MPLIAIDNVKKRFGDNEVLKGI+LDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI Sbjct: 1 MPLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 Query: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAK 120 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKG SEAEAM TAK Sbjct: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAK 120 Query: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV Sbjct: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 Query: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIGM 240 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIGM Sbjct: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIGM 240 Query: 241 TQGA 244 TQGA Sbjct: 241 TQGA 244 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 313 bits (801), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 151/239 (63%), Positives = 185/239 (77%) Query: 1 MPLIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 MP++ I+N+ KRFG N+VL GI+L VE G+V+AIIG+SGSGKST+LRCINGLE+ID G+I Sbjct: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 Query: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAK 120 +VAG KL L LR VGM+FQ +NLFPHL+V N+M++P IVK T+ A TA Sbjct: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 L++VGL HK DAYP+QLSGGQQQRVAIAR+L+M PQ +L DE+TSALDPEL EVL V Sbjct: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 Query: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 M LA+ GMT+L+VTHEM FAR V + VFMHQGKV E P EE F +P+TPE +QFIG Sbjct: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIG 239 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 286 bits (732), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 137/238 (57%), Positives = 183/238 (76%), Gaps = 1/238 (0%) Query: 3 LIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 ++ I ++ K FG N+VL G++LDV+ G+++AIIGKSGSGKSTLLRC+NGLE +D G+I V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 63 AGAKLGA-SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAKA 121 G + +L LR LR +VG++FQ +NLFPHL+V RN+ +A +K S +A A Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHK 123 Query: 122 NLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVM 181 L+ VGL +K DAYP+QLSGGQ QRVAIAR+L+M+P+ +L DE+TSALDPEL EVL VM Sbjct: 124 VLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 Query: 182 RGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 LA+ GMT+++VTHEM FAR++ + LVFMHQG+V EIGPP+ELF +PKT ELQ+F+ Sbjct: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVS 241 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 273 bits (697), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/237 (56%), Positives = 180/237 (75%), Gaps = 1/237 (0%) Query: 3 LIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 ++ +D V K FGDN+VLKG++ +V GE+IAIIG SGSGKST LRCI+ LE+ID G+I V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAKAN 122 AG ++ +++L LR +VG++FQ +NLFPHL+V NVM+A VK +AEA A A Sbjct: 86 AGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALAA 145 Query: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 L +VGL K +AYP+QLSGGQQQRVAIAR+L+M+P+ +L DE+TSALDP+L EVL VM Sbjct: 146 LAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVME 205 Query: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 LA GMT+L+VTHEM FA+ V +R+++MHQG+V E+G P E+ +P TPELQ F+ Sbjct: 206 DLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLDHPYTPELQAFLA 261 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 272 bits (696), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/237 (56%), Positives = 172/237 (72%), Gaps = 1/237 (0%) Query: 3 LIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 ++ + V KRFG N VL+G++ V GEV+AIIGKSGSGKST LRCIN LE ID G ISV Sbjct: 4 VVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 Query: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAKAN 122 G L A+ L+LR LR VG++FQ +NLFPHL+V +N+ + P VK +A A+ Sbjct: 64 CGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLAQQV 123 Query: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 L +VGL K AYP+QLSGGQQQRVAIAR+L++ PQ +L DE+TSALDPEL EVL VM Sbjct: 124 LARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVLKVME 183 Query: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 +A EGMT+++VTHEM FAR V ++++FMHQG+V E G P E+ P TPEL+ F+G Sbjct: 184 QMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGP-EILDAPVTPELRSFVG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 722,183 Number of extensions: 27975 Number of successful extensions: 522 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 146 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)