BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4106.p (218 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 238 3e-64 gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 224 5e-60 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 218 2e-58 gi|300309584|ref|YP_003773676.1| amino acid ABC transporter perm... 166 1e-42 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 125 3e-30 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 238 bits (607), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 112/217 (51%), Positives = 168/217 (77%), Gaps = 1/217 (0%) Query: 1 MISFTTWDIVRNLMLAWRWTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELF 60 M++ ++D L+ A RWT+LLS + FL GG G ++ MRTS +R ++ +YI++ Sbjct: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 Query: 61 QGTPLLMQLFLVFFGIALFGIEVPAWLAAGLALTCWAASYLAEIWRGCVEAIPKGQWEAS 120 QGTP+L+ LFL F+G+A+FG ++P +AA +A+T ++++YL EIWRGC+EA+P QWEAS Sbjct: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 Query: 121 SVLAMGYFQQMRYIVLPQAFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGTVITNAT 180 + LAM +QQ+RY++LPQA RI++ PTVGF VQI+K+T++ SIIG +EL++AG +++NAT Sbjct: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 Query: 181 FRPFTVFAIVGALYFVLCWPLSKYSQSLERKYNAAHR 217 F+PF VF IV +YFV C+PLS+++ +LERKY+ AHR Sbjct: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYH-AHR 216 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 224 bits (570), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 99/199 (49%), Positives = 155/199 (77%) Query: 19 WTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELFQGTPLLMQLFLVFFGIAL 78 WT++LS + F+LGG G +++ R S W+R+ A L+IE QG PLL+ LF+V+FG+++ Sbjct: 19 WTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIPLLILLFIVYFGLSV 78 Query: 79 FGIEVPAWLAAGLALTCWAASYLAEIWRGCVEAIPKGQWEASSVLAMGYFQQMRYIVLPQ 138 +G+ +PA +AAGLA+ + ++YL +IWRGCVEA+P+ QWEAS L++ +Q +R +++PQ Sbjct: 79 YGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLSLTRWQTLRLVIIPQ 138 Query: 139 AFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGTVITNATFRPFTVFAIVGALYFVLC 198 A R+++ PT+GF VQ+IK T++ S+IGF+EL++AG +I N+ F+PF VF +VG+ YF+LC Sbjct: 139 ATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPFLVFLLVGSFYFLLC 198 Query: 199 WPLSKYSQSLERKYNAAHR 217 +PLS++S S+ERK N +HR Sbjct: 199 YPLSRWSASMERKLNVSHR 217 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 218 bits (556), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 103/208 (49%), Positives = 146/208 (70%) Query: 10 VRNLMLAWRWTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELFQGTPLLMQL 69 V L+ A WT++LSLV F+ GG G VI R S +R IA YI++ QG PLL+ L Sbjct: 9 VEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVIL 68 Query: 70 FLVFFGIALFGIEVPAWLAAGLALTCWAASYLAEIWRGCVEAIPKGQWEASSVLAMGYFQ 129 F+ +FG+A+ G ++ +AAG++ + A++L EIWRGC++A+PK QWEAS L F+ Sbjct: 69 FVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFE 128 Query: 130 QMRYIVLPQAFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGTVITNATFRPFTVFAI 189 Q+ ++LPQA +IA PTVGF VQI+K+T++ S+IGF++LS+AG +I N+TF+PFTVF Sbjct: 129 QLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGC 188 Query: 190 VGALYFVLCWPLSKYSQSLERKYNAAHR 217 V +YF LC+PLS S+ ERK N +HR Sbjct: 189 VALIYFCLCFPLSALSKHFERKLNVSHR 216 >gi|300309584|ref|YP_003773676.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 215 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 84/178 (47%), Positives = 123/178 (69%), Gaps = 2/178 (1%) Query: 42 RTSRQNWIRQIARLYIELFQGTPLLMQLFLVFFGIALFGI-EVPAWLAAGLALTCWAASY 100 R S +R++A +I+L QGTPLL+ + + F+G AL G+ V A AA A+ + +++ Sbjct: 38 RVSALRPLRRLAAAWIQLIQGTPLLVLMGVCFYGPALAGVGTVEALPAAATAMLIYTSAF 97 Query: 101 LAEIWRGCVEAIPKGQWEASSVLAMGYFQQMRYIVLPQAFRIAIAPTVGFGVQIIKSTAV 160 L EIWRGC++++ K QWEA+ + + +Q+MR IVLPQA R+A PTVGF VQ+IK+T+V Sbjct: 98 LGEIWRGCIQSVHKSQWEAAECIGLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSV 157 Query: 161 TS-IIGFIELSKAGTVITNATFRPFTVFAIVGALYFVLCWPLSKYSQSLERKYNAAHR 217 S +IGF ELS V+ N+TF+PF F LYF +C+PLS++S++LERK +A R Sbjct: 158 ASLVIGFAELSYNAKVLNNSTFQPFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 125 bits (314), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 111/199 (55%) Query: 19 WTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELFQGTPLLMQLFLVFFGIAL 78 +T+L +L + L G LG V+ R I A +Y+ + +GTPLL+Q+F+V++G+ Sbjct: 22 YTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFVVYYGLPG 81 Query: 79 FGIEVPAWLAAGLALTCWAASYLAEIWRGCVEAIPKGQWEASSVLAMGYFQQMRYIVLPQ 138 GIE A L L+ A++YL+E RG + + +GQW A+ + + YFQ +RYI++PQ Sbjct: 82 MGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLRYIIVPQ 141 Query: 139 AFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGTVITNATFRPFTVFAIVGALYFVLC 198 A RIA+ + +IK T++ S+I EL A + TFRP ++ A+Y++L Sbjct: 142 AVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWMLS 201 Query: 199 WPLSKYSQSLERKYNAAHR 217 LE+K AH+ Sbjct: 202 LCFEALQHRLEKKLGKAHQ 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.141 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 590,280 Number of extensions: 21769 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 19 Length of query: 218 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 136 Effective length of database: 1,231,600 Effective search space: 167497600 Effective search space used: 167497600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)