BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4105.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 427 e-121 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 197 4e-52 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 197 7e-52 gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 192 2e-50 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 189 1e-49 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 427 bits (1098), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/223 (95%), Positives = 219/223 (98%) Query: 1 MAYQFDFLSTLDYSDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 MAYQFDFLST DY+DVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKP+VSGY Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VEIIRNTPFLVQLFFIFFGLPSLDIHISE+ AAI+AMVINLGAYSTEIIRAGVQAIPRGQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAQSLSMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 IEAAQSLSMSR QIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAAN+I Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLSILLRQLLRLIGHYFITARRNA 223 QGRNFRAFEAYIVATAIYLVL+ILLRQ+LRLIGHYFITARR A Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 197 bits (502), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 97/214 (45%), Positives = 147/214 (68%) Query: 1 MAYQFDFLSTLDYSDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 M + DF Y V + G T+++ + ++GVA+GIF A+A+ WL S Y Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 +E++RNTPFLVQ+F ++FGL SL I + AA+LAM+IN+ AY+ EIIRAG+ ++PRGQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 IEAAQSLSMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 IEAAQ L +S +I H++L+PA+++++PAL+SQ +++M SA+ SQI+ EEL+ AN + Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QGRNFRAFEAYIVATAIYLVLSILLRQLLRLIGH 214 Q FR+ E Y+V A+YLVL+IL++ + IG Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGE 214 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 197 bits (500), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 105/222 (47%), Positives = 147/222 (66%) Query: 1 MAYQFDFLSTLDYSDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 M Y F F + D ++ G TI L A+ + G+AVGIFGA G + V+ Y Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IR+TPFLVQLF IFFGLPS+ + + AA++AM +NLGAYSTEI+RAG+ AI Q Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAQSLSMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 IEAAQ+L+M+R Q+ RH++L PAL+K++PAL+SQ ++ML S++ S I+ EEL+ AN + Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 QGRNFRAFEAYIVATAIYLVLSILLRQLLRLIGHYFITARRN 222 FR+FE Y+V +Y++L++L R LIG RR Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRR 222 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 192 bits (488), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 139/206 (67%) Query: 1 MAYQFDFLSTLDYSDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 M Y FDF+S D ++ G TI+L A+ VLG AVG A A ++ +V Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VEIIRNTP LVQ+F +FFGL S+ +S AA++A+ +N+GAY+TEI+RAG+ +I GQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAQSLSMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 IEAA+ L MSR ++ H++L PA+++++P+L+SQ +++ML S++ SQI+ EEL+ AN + Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QGRNFRAFEAYIVATAIYLVLSILLR 206 Q FR+FE Y V YLVLS L R Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFR 206 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 189 bits (481), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 147/222 (66%) Query: 1 MAYQFDFLSTLDYSDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 M Y+FDF S + ++++G TT++L + +LG +G A AR GWL+ VSGY Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTP L+Q +F+ FGL S+ + + M A LA+VIN+GAYS EI+RAG+++I GQ Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 IEAAQSLSMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 +EAA L +S +Q+F H++L PA++++WPAL+SQ V++ML S++ S + EEL AN + Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 QGRNFRAFEAYIVATAIYLVLSILLRQLLRLIGHYFITARRN 222 Q FR FE +++ A YL L+ L+R L+G T RR Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRK 222 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.141 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 506,638 Number of extensions: 16291 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 19 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)