BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4102.p
         (516 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313526|ref|YP_003777618.1| hypothetical protein Hsero_4241...   798   0.0  

>gi|300313526|ref|YP_003777618.1| hypothetical protein Hsero_4241
           [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/520 (79%), Positives = 451/520 (86%), Gaps = 4/520 (0%)

Query: 1   METELKLLLAPEHTKAFIRHPLLKRHALAAPRIKDQTGTYFDTPELLLRRHEAGLRVRRT 60
           METELKLL+AP HT+AFIRHPL+KR+ALAAPRIKDQ GTYFDTP+LLLR ++AGLRVRRT
Sbjct: 1   METELKLLIAPAHTQAFIRHPLIKRYALAAPRIKDQIGTYFDTPDLLLRGNDAGLRVRRT 60

Query: 61  GNEYIQTLKAGGGVSGGLHQRNEWESLVAGEQPDLPVLRELAASDEAWAKKVFSDATAAC 120
           G EYIQTLKAGGGVSGGLHQR+EWESLV GEQPDL VLREL  SD  WA+KVFS  TAA 
Sbjct: 61  GKEYIQTLKAGGGVSGGLHQRHEWESLVEGEQPDLAVLRELVDSDAPWARKVFSRQTAAR 120

Query: 121 LTPIFSTRIQRMVWDLKLDDGTEVECVLDQGLVEHGALQVEVCEIELELKSGQAASLFDF 180
           LTPIFSTRIQRMVWDLKLDDG EVECVLD+G VEHGALQ EVCEIELELKSG+A SL  F
Sbjct: 121 LTPIFSTRIQRMVWDLKLDDGAEVECVLDRGTVEHGALQTEVCEIELELKSGEATSLLGF 180

Query: 181 ALQLLQDLPLRIGIQSKAQRGYALFHQARRGDAAASSSASRAKPLLLTRKMPLEQAFLAV 240
           AL+LLQDLPLRIGIQSKAQRGY LFHQAR+GDAAASSSA+RA+PL LTRKMPLEQAFLAV
Sbjct: 181 ALRLLQDLPLRIGIQSKAQRGYTLFHQARQGDAAASSSATRAQPLQLTRKMPLEQAFLAV 240

Query: 241 VSNCLEQIQANDIADQDSGDIERLHQMRVGLRRLRSAFTLFHEVIALPAALSAQFDWAAE 300
           + NC+ QIQANDIADQDSGDIERLHQMRVGLRRLRSAFTLF +VI LPAAL ++F+W AE
Sbjct: 241 IGNCVAQIQANDIADQDSGDIERLHQMRVGLRRLRSAFTLFGQVITLPAALESEFEWIAE 300

Query: 301 AIGVARDWDVLATQTLSALPAAEIDSIDLERVRKAALIEAGKEHAQAVQAVASPRYTALV 360
           AIG ARDWDVLAT+TL  L       +DL+ VRKAALI+AGKEHA AV AVASPRYT LV
Sbjct: 301 AIGTARDWDVLATETLPLLEMPTAAGVDLDAVRKAALIQAGKEHALAVHAVASPRYTVLV 360

Query: 361 LQFSRWLLQAGWREG----LDEHGLQTLTQPLSRFAHQMLRRDEKRLNKRGEHLEDSDRA 416
           LQF+RWLLQ GWRE      D+     L QPL+RFA QML+RD+KRL+KRG HLE+SDRA
Sbjct: 361 LQFNRWLLQRGWRENQGQEQDQAAPSALAQPLARFARQMLQRDQKRLSKRGAHLEESDRA 420

Query: 417 RHRTRIAAKKMRYDIEFFLALYGEKSSRPYLKALSRLQDQLGLQNDLVVADALLQQLQHK 476
           RHRTRIAAKKMRYD+EFF ALYGEK+SR YLKAL+RLQD LG QNDLVVADALLQQLQ  
Sbjct: 421 RHRTRIAAKKMRYDVEFFQALYGEKNSRAYLKALARLQDHLGQQNDLVVADALLQQLQQG 480

Query: 477 HTRLAPSIGYARGYLAGQMRDGHERTRRLWKKWKAQELPQ 516
            TR APSI + RG+LAGQ RDGH  TRRLWKKW++QELP+
Sbjct: 481 QTRQAPSIAWVRGFLAGQTRDGHAHTRRLWKKWQSQELPR 520


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,514,378
Number of extensions: 60641
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 427
Effective length of database: 1,198,455
Effective search space: 511740285
Effective search space used: 511740285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)