BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4100.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313524|ref|YP_003777616.1| cyanate permease [Herbaspirillu...   617   e-178

>gi|300313524|ref|YP_003777616.1| cyanate permease [Herbaspirillum
           seropedicae SmR1]
          Length = 401

 Score =  617 bits (1591), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 351/393 (89%), Positives = 365/393 (92%)

Query: 6   TRPHSVSPASRSLWLIAGILLIAANLRAPVTAVGPVIGLLQQSFALSAGAAGLMLTLPLL 65
           T PH VSP  RSLWLIAGILLIAANLRAPVTAVGPV+G+LQQ+FALSAGAAGLMLTLPLL
Sbjct: 8   THPHGVSPVPRSLWLIAGILLIAANLRAPVTAVGPVMGVLQQTFALSAGAAGLMLTLPLL 67

Query: 66  CFALVSPLAARLARGLGLERTLLLALLLIAGGIALRSAGSVAALLLGTCVIGCGIAGGNV 125
           CFALVSPLAAR AR LGLERTLLLALLLI  GI LRS+G+VA LL GTC+IGCGIAGGNV
Sbjct: 68  CFALVSPLAARTARSLGLERTLLLALLLIGAGILLRSSGTVAGLLAGTCIIGCGIAGGNV 127

Query: 126 LLPSLLKRDFPDDLTRMTAIYALTMGGASALGSVCAVPLAAALGWAWALAAFIALPLVAL 185
           LLPSLLKRDF DDLTRMTAIYALTM   SALGSVCAVPLA  LGWAWALAAFIALPLVA+
Sbjct: 128 LLPSLLKRDFADDLTRMTAIYALTMNSVSALGSVCAVPLATRLGWAWALAAFIALPLVAM 187

Query: 186 LAWLPQLRRDTRPAAPPPRAASMWRQPLAWQVTFFLGTNSLVYYVVTAWLPSILAANGDS 245
           LAWLPQL+RDTRPA  P RAAS+WRQPLAWQVTFFLGTNSLVYYVVTAWLPSILAANG S
Sbjct: 188 LAWLPQLQRDTRPANVPARAASIWRQPLAWQVTFFLGTNSLVYYVVTAWLPSILAANGYS 247

Query: 246 PLQAGNLHGLMQLASALPGLLLVPLGPRLRDHRPVAVGMSAATVLSLIGLIAWPQASIVW 305
            +QAGNLHGLMQLASALPGLLLVPLGPR+RDHRPVAV MSAATVLSL+GLIAWPQAS+VW
Sbjct: 248 AVQAGNLHGLMQLASALPGLLLVPLGPRIRDHRPVAVSMSAATVLSLVGLIAWPQASLVW 307

Query: 306 VPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAATGPIVMGRLHDASGG 365
           VPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAATGPIVMGRLHDA+GG
Sbjct: 308 VPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAATGPIVMGRLHDANGG 367

Query: 366 WTAVLALCAGGAALMGLLGWLAGRPGRVIKADA 398
           WT VLALCAGGA LMG LGWLAGRPGRVI A A
Sbjct: 368 WTPVLALCAGGAVLMGWLGWLAGRPGRVIGASA 400


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 947,550
Number of extensions: 32230
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)