BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4099.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313523|ref|YP_003777615.1| hypothetical protein Hsero_4238...   372   e-104

>gi|300313523|ref|YP_003777615.1| hypothetical protein Hsero_4238
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  372 bits (955), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/223 (83%), Positives = 197/223 (88%)

Query: 1   MNASLFAPVDLYCERLSPAFWAEPVNALSNLGFFVAAFCAWRLLKSYSAPTSRSAWILTL 60
           MN SLFAPVDLYCERLSPAFWAEPVNALSNLGF VAA+CAWRLLKS    TS +A IL L
Sbjct: 1   MNDSLFAPVDLYCERLSPAFWAEPVNALSNLGFIVAAYCAWRLLKSRGMRTSSTAGILAL 60

Query: 61  MIAVIGIGSFLFHTVAERWALLADVIPISFYQLLFLAFYLRQVARLSLPGVGAWVIAFFA 120
           MIAVIGIGSFLFHTVA RWALLADVIPIS YQ+LFLAFYLRQVARLSLP V AW++AFFA
Sbjct: 61  MIAVIGIGSFLFHTVAVRWALLADVIPISLYQVLFLAFYLRQVARLSLPVVAAWLLAFFA 120

Query: 121 ISYGVSTLPDQWLNGSLSSYGSAWLFIAGLGVYHWRSGKQEPQALLLAVAVFSLSLLFRS 180
            SYG+  LPDQWLNGSLSSYGSAWLFIAGLGVYHWR  K EP  LLLA+ VF+LSL FRS
Sbjct: 121 TSYGIGALPDQWLNGSLSSYGSAWLFIAGLGVYHWRPDKHEPMTLLLALGVFTLSLAFRS 180

Query: 181 ADMAVCKYLSIGTHMFWHLSNSIVLYLTTRAFIVNLRPSQRPG 223
           ADMAVC Y+SIGTHMFWHLSNSIVLYLTTRAFIVNL+P Q+ G
Sbjct: 181 ADMAVCHYVSIGTHMFWHLSNSIVLYLTTRAFIVNLQPLQQSG 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 722,336
Number of extensions: 27847
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)