BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4096.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313520|ref|YP_003777612.1| transcription regulator protein... 452 e-128 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 166 2e-42 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 138 3e-34 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 112 2e-26 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 102 4e-23 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 452 bits (1162), Expect = e-128, Method: Compositional matrix adjust. Identities = 228/232 (98%), Positives = 230/232 (99%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE Sbjct: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDE 120 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSP+AVLQIVELRRAIEAEVAAQAAKRRS E Sbjct: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAIT 180 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATA+T Sbjct: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 RGNEARYEDFSRQVREEHEAIV AIRAGDEMAARNAAQTHMFNAARRLSQGQ Sbjct: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 166 bits (419), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 139/222 (62%), Gaps = 3/222 (1%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 L+D V L I AG F ++LP+E L ++F VSRTV+REAI+RLK EG+V R+GS Sbjct: 30 LADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRGS 89 Query: 70 GVFVTEQAGIKPLRIDYT---EVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIE 126 G V P R+D S QAVL+++ELRR +E E+AA AA+RR+ AI+ Sbjct: 90 GTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLAIQ 149 Query: 127 AALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAITRGNEAR 186 AL I AAG DGV D AFH A++ A+ NP + ++FLSQ+L AA + R NEAR Sbjct: 150 QALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEAR 209 Query: 187 YEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRL 228 +F +QVR EH A+ AI AGD AAR AA HM N+A+RL Sbjct: 210 SNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRL 251 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 138 bits (348), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/230 (40%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 8 QALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQ 67 Q+LS V L I G+ G KLPTE+ + Q GVSRTVVREAI+RL+ G+VE R Sbjct: 18 QSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRH 77 Query: 68 GSGVFVTEQAGIKPLRIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIEA 127 G G FV E + ID +++ + +L ++ELR ++E E A AA RR++E LQ I Sbjct: 78 GIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEIRE 137 Query: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAIT-----RG 182 AL + GGD V D FH A+A AT N YFI+ + L + I Sbjct: 138 ALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAELAHD 197 Query: 183 NEARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 +A Y D +V+ EHE I AI GD AAR A + H+ N+ RL + Q Sbjct: 198 QQASYLD---RVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQ 244 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 13/227 (5%) Query: 11 SDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGSG 70 S+ + RQ++ I G KLPTE LAQ++ SRT VREA++RL+ EG+V R+GSG Sbjct: 20 SEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79 Query: 71 VFVTEQAGIKPLRIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIEAALA 130 +V + +++S V + R +E A AA R DED+QA+ AL Sbjct: 80 NYVQRLPTLSSQ--GSPQIASIHDVERYYAFRECVEVGAAGIAATARQDEDVQAMRIALQ 137 Query: 131 QIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEF----LSQYLEAATAITRGNEAR 186 + G GV D+A H A+A+ATRNP+FI T+E + Q +E A N Sbjct: 138 ALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEHALGPIRQCMELAQ-----NLGS 192 Query: 187 YEDFSR--QVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQG 231 +D R + +EH+AI+ AI G A A + H+ +A R+ +G Sbjct: 193 PQDGERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRIFEG 239 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 102 bits (253), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 111/221 (50%), Gaps = 3/221 (1%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 ++ V L I G GSKLP+E LA F VSR VVR+A+ RL+ + +VE +GS Sbjct: 32 FAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGS 91 Query: 70 GVFVTEQAGIKPLRIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIEAAL 129 G +V E+ G+ P + + ++ +ELR IE E AA AA RR+ +DL +E L Sbjct: 92 GTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMERLL 151 Query: 130 AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAITRG--NEARY 187 GG D FH A+A AT N F++ ++ L + A + R + A + Sbjct: 152 EGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIAPW 211 Query: 188 EDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRL 228 + S+ +EH I IR D AR A + H+ NA R+ Sbjct: 212 KR-SQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTRM 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.129 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 550,159 Number of extensions: 18817 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 16 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)