BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4093.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313517|ref|YP_003777609.1| class II aldolase/adducin domai...   429   e-122

>gi|300313517|ref|YP_003777609.1| class II aldolase/adducin
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 215

 Score =  429 bits (1103), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/215 (97%), Positives = 212/215 (98%)

Query: 1   MSRTTNESALREEICRIGASLYQRGYTVGSAGNISARLDDGWLITPTDACLGFLDPAAIA 60
           MSR TNESALREEICRIGASLYQRGYTVGSAGNISARL+DGWLITPTDACLGFLDPAAIA
Sbjct: 1   MSRNTNESALREEICRIGASLYQRGYTVGSAGNISARLEDGWLITPTDACLGFLDPAAIA 60

Query: 61  KVNAAGEWVSGDKPSKTLVLHRAIYDNNPAMHAVVHTHSTHLVSLTINGVYSEADVLPPI 120
           KVNAAGEWVSGDKPSKTLVLHRAIYDNNP MHAVVHTHSTHLVSLTINGVYSE DVLPPI
Sbjct: 61  KVNAAGEWVSGDKPSKTLVLHRAIYDNNPEMHAVVHTHSTHLVSLTINGVYSEQDVLPPI 120

Query: 121 TPYYVMKVGHIPLIRYARPGAPEVAEQVAKIATQVRGVLLERLGPVVWESSVSKAAFALE 180
           TPYYVMKVGHIPLIRYARPGAPEVAEQVAKIATQVRGVLLERLGPVVWESSVSKAAFALE
Sbjct: 121 TPYYVMKVGHIPLIRYARPGAPEVAEQVAKIATQVRGVLLERLGPVVWESSVSKAAFALE 180

Query: 181 ELEETAKLWHLAGGRATPLEEPALQELRATFKARW 215
           ELEETAKLWHLAGGRATPLEEPAL++LRATFKARW
Sbjct: 181 ELEETAKLWHLAGGRATPLEEPALEDLRATFKARW 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 681,610
Number of extensions: 26445
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)